DBNascent | Datasets

Czimmerer2018transcription

**Samples in dataset (Table view)**
SRR6246979
SRR6247018

**Downloads (all samples in dataset)**
TDFs (visualization files)	Zip archive	52 Mb
Read counts and bidirectional calls	Zip archive	12 Mb

**Paper Details**
SRP accession	SRP123511
GEO accession	GSE106703
Protocol	GRO-seq
Organisms	M. musculus
Library Prep	ligation
Spike-in
Published	Yes
Year	2018
First Author	Czimmerer
Last Author	Nagy
DOI	10.1016/j.immuni.2017.12.010
Full citation	Zsolt Czimmerer, Bence Daniel, Attila Horvath, Dominik Ruckerl, Gergely Nagy, Mate Kiss, Matthew Peloquin, Marietta M. Budai, Ixchelt Cuaranta-Monroy, Zoltan Simandi, Laszlo Steiner, Bela Nagy, Szilard Poliska, Csaba Banko, Zsolt Bacso, Ira G. Schulman, Sascha Sauer, Jean-Francois Deleuze, Judith E. Allen, Szilvia Benko, and Laszlo Nagy. The transcription factor STAT6 mediates direct repression of inflammatory enhancers and limits activation of alternatively polarized macrophages. Immunity, 48(1):75-90.e6, Jan 2018.
Median QC score	4.0
ATAC-seq?	Yes
RNA-seq?	Yes
ChIP-seq?	Yes
3D Seq?	No
Other Seq?	No