Leveille2015genome
Downloads (all samples in dataset)
All metadata TXT 6 Kb
TDFs (visualization files) ZIP archive 792 Mb
Read counts and bidirectional calls ZIP archive 36 Mb
Paper Details
SRP accession SRP034626
GEO accession GSE53499
Protocol GRO-seq
Organisms H. sapiens
Library Prep ligation
Spike-in
Published Yes
Year 2015
First Author Leveille
Last Author Agami
DOI 10.1038/ncomms7520
Full citation Nicolas Leveille, Carlos A. Melo, Koos Rooijers, Angel Diaz-Lagares, Sonia A. Melo, Gozde Korkmaz, Rui Lopes, Farhad Akbari Moqadam, Ana R. Maia, Patrick J. Wijchers, Geert Geeven, Monique L. den Boer, Raghu Kalluri, Wouter de Laat, Manel Esteller, and Reuven Agami. Genome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA. Nat Commun, 6, March 2015.
Median QC score
Information
3.0
ATAC-seq? No
RNA-seq? Yes
ChIP-seq? Yes
3D Seq? Yes
Other Seq? Yes