Explore DBNascent | browse or search sample metadata

 

Search

Advanced Search

All Samples

Samples By Dataset

Dataset Details

Linnakuosmanen2020nrf2
Samples in dataset (Table view)
SRR10063517
SRR10063518
SRR10063519
SRR10063520
SRR10063521
SRR10063522
SRR10063523
SRR10063524
SRR10063525
SRR10063526
SRR10063527
SRR10063528
SRR10063529
SRR10063530
SRR10063531
SRR10063532
SRR10063533
SRR10063534
SRR10063535
SRR10063536
SRR10063537
SRR10063540
SRR10063541
SRR10063544
SRR10063545
SRR10063548
SRR11849645
SRR11849646
SRR11849647
SRR11849648
Downloads (all samples in dataset)
All metadata TXT 31 Kb
TDFs (visualization files) ZIP archive 1.8 Gb
Read counts and bidirectional calls ZIP archive 249 Mb
Paper Details
SRP accession SRP220198
GEO accession GSE136813
Protocol GRO-seq
Organisms H. sapiens
Library Prep circularization
Spike-in
Published Yes
Year 2020
First Author Linna-Kuosmanen
Last Author Kaikkonen
DOI 10.1093/cvr/cvaa219
Full citation Suvi Linna-Kuosmanen, Vanesa Tomas Bosch, Pierre R. Moreau, Maria Bouvy-Liivrand, Henri Niskanen, Emilia Kansanen, Annukka Kivela, Juha Hartikainen, Mikko Hippelainen, Hannu Kokki, Pasi Tavi, Anna-Liisa Levonen, and Minna U. Kaikkonen. NRF2 is a key regulator of endothelial microRNA expression under proatherogenic stimuli. Cardiovascular Research, 177(5)1339-1357, May 2021.
Median QC score
Information
2.0
ATAC-seq? No
RNA-seq? Yes
ChIP-seq? No
3D Seq? No
Other Seq? Yes