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Paper Details
Trizzino2018tumor
| SRR6128874 |
| SRR6128875 |
| SRR6145792 |
| SRR6145793 |
| TDFs (visualization files) | Zip archive | 249 Mb |
| Read counts and bidirectional calls | Zip archive | 31 Mb |
| SRP accession | SRP119318 |
| GEO accession | GSE104545 |
| Protocol | GRO-seq |
| Organisms | H. sapiens |
| Library Prep | circularization |
| Spike-in | |
| Published | Yes |
| Year | 2018 |
| First Author | Trizzino |
| Last Author | Gardini |
| DOI | 10.1016/j.celrep.2018.05.097 |
| Full citation | Marco Trizzino, Elisa Barbieri, Ana Petracovici, Shuai Wu, Sarah A. Welsh, Tori A. Owens, Silvia Licciulli, Rugang Zhang, and Alessandro Gardini. The tumor suppressor ARID1A controls global transcription via pausing of RNA polymerase II. Cell Reports, 23(13):3933-3945, 2018. |
|
Median QC score
|
4.0 |
| ATAC-seq? | Yes |
| RNA-seq? | Yes |
| ChIP-seq? | Yes |
| 3D Seq? | No |
| Other Seq? | No |