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SRR4090098,SRR4090099,SRR4090100,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR4090098 | 125 | Andrysik2017identification | GRO-seq | circularization | control | True | 4 | 1 |
| SRR4090099 | 126 | Andrysik2017identification | GRO-seq | circularization | control | True | 3 | 2 |
| SRR4090100 | 127 | Andrysik2017identification | GRO-seq | circularization | experimental | False | 4 | 1 |
| SRR4090101 | 128 | Andrysik2017identification | GRO-seq | circularization | experimental | False | 3 | 2 |
| SRR4090102 | 129 | Andrysik2017identification | GRO-seq | circularization | control | True | 1 | 1 |
| SRR4090103 | 130 | Andrysik2017identification | GRO-seq | circularization | control | True | 1 | 2 |
| SRR4090104 | 131 | Andrysik2017identification | GRO-seq | circularization | experimental | False | 1 | 1 |
| SRR4090105 | 132 | Andrysik2017identification | GRO-seq | circularization | experimental | False | 1 | 2 |
| SRR4090106 | 133 | Andrysik2017identification | GRO-seq | circularization | control | True | 1 | 1 |
| SRR4090107 | 134 | Andrysik2017identification | GRO-seq | circularization | control | True | 2 | 2 |
| SRR4090108 | 135 | Andrysik2017identification | GRO-seq | circularization | experimental | False | 1 | 1 |
| SRR4090109 | 136 | Andrysik2017identification | GRO-seq | circularization | experimental | False | 1 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR4090098 | H. sapiens | cell line | HCT116 | ||||
| SRR4090099 | H. sapiens | cell line | HCT116 | ||||
| SRR4090100 | H. sapiens | cell line | HCT116 | ||||
| SRR4090101 | H. sapiens | cell line | HCT116 | ||||
| SRR4090102 | H. sapiens | cell line | MCF7 | ||||
| SRR4090103 | H. sapiens | cell line | MCF7 | ||||
| SRR4090104 | H. sapiens | cell line | MCF7 | ||||
| SRR4090105 | H. sapiens | cell line | MCF7 | ||||
| SRR4090106 | H. sapiens | cell line | SJSA | ||||
| SRR4090107 | H. sapiens | cell line | SJSA | ||||
| SRR4090108 | H. sapiens | cell line | SJSA | ||||
| SRR4090109 | H. sapiens | cell line | SJSA |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR4090098 | vehicle | DMSO (0.2%) | -1 hr | 0 hr | 1 hr |
| SRR4090099 | vehicle | DMSO (0.2%) | -1 hr | 0 hr | 1 hr |
| SRR4090100 | treatment | nutlin-3 (10 microM) | -1 hr | 0 hr | 1 hr |
| SRR4090101 | treatment | nutlin-3 (10 microM) | -1 hr | 0 hr | 1 hr |
| SRR4090102 | vehicle | DMSO (0.2%) | -1 hr | 0 hr | 1 hr |
| SRR4090103 | vehicle | DMSO (0.2%) | -1 hr | 0 hr | 1 hr |
| SRR4090104 | treatment | nutlin-3 (10 microM) | -1 hr | 0 hr | 1 hr |
| SRR4090105 | treatment | nutlin-3 (10 microM) | -1 hr | 0 hr | 1 hr |
| SRR4090106 | vehicle | DMSO (0.2%) | -1 hr | 0 hr | 1 hr |
| SRR4090107 | vehicle | DMSO (0.2%) | -1 hr | 0 hr | 1 hr |
| SRR4090108 | treatment | nutlin-3 (10 microM) | -1 hr | 0 hr | 1 hr |
| SRR4090109 | treatment | nutlin-3 (10 microM) | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR4090098 | 50 | 54,636,150 | 0.88664 | 0.8586 | 3.71858 | 0.31954 | 4 | 2 |
| SRR4090099 | 50 | 136,926,976 | 0.73197 | 0.9291 | 3.53941 | 0.55831 | 3 | 2 |
| SRR4090100 | 50 | 161,191,302 | 0.80579 | 0.9182 | 3.41541 | 0.58952 | 4 | 2 |
| SRR4090101 | 50 | 148,186,888 | 0.79063 | 0.9355 | 3.39016 | 0.53769 | 3 | 2 |
| SRR4090102 | 50 | 38,722,314 | 0.41075 | 0.9296 | 3.71833 | 0.65083 | 1 | 2 |
| SRR4090103 | 50 | 47,794,589 | 0.4227 | 0.9438 | 3.84708 | 0.65997 | 1 | 2 |
| SRR4090104 | 50 | 39,450,817 | 0.41455 | 0.9424 | 3.51451 | 0.65522 | 1 | 2 |
| SRR4090105 | 50 | 36,653,879 | 0.38484 | 0.9294 | 3.36477 | 0.68032 | 1 | 2 |
| SRR4090106 | 50 | 45,271,323 | 0.3631 | 0.936 | 3.65429 | 0.71547 | 1 | 2 |
| SRR4090107 | 50 | 163,568,967 | 0.53062 | 0.9229 | 3.24745 | 0.61768 | 2 | 2 |
| SRR4090108 | 50 | 53,227,310 | 0.33859 | 0.9316 | 3.03827 | 0.74691 | 1 | 2 |
| SRR4090109 | 50 | 48,987,978 | 0.38495 | 0.9161 | 3.351 | 0.69929 | 1 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR4090098 | 23876 | 11231 | 8806 | 3092 | 15726 | 7333 | 5134 | 2588 |
| SRR4090099 | 52505 | 19481 | 19013 | 12909 | 41747 | 8963 | 18263 | 13090 |
| SRR4090100 | 46045 | 16375 | 17439 | 11153 | 39306 | 8316 | 17116 | 12024 |
| SRR4090101 | 50439 | 19545 | 18426 | 11468 | 37959 | 8929 | 16075 | 11552 |
| SRR4090102 | 36804 | 16337 | 13187 | 6207 | 23511 | 7498 | 9207 | 5419 |
| SRR4090103 | 38880 | 16690 | 13889 | 7336 | 26329 | 7659 | 10660 | 6561 |
| SRR4090104 | 37650 | 16348 | 13668 | 6666 | 24713 | 7573 | 9711 | 5989 |
| SRR4090105 | 37826 | 15898 | 14276 | 6469 | 24683 | 7689 | 10009 | 5696 |
| SRR4090106 | 45212 | 17983 | 16862 | 9174 | 26591 | 7869 | 10936 | 6396 |
| SRR4090107 | 53937 | 18373 | 19881 | 13298 | 64825 | 7952 | 32392 | 22002 |
| SRR4090108 | 48240 | 18034 | 17961 | 10174 | 30778 | 7999 | 13570 | 7929 |
| SRR4090109 | 49227 | 17515 | 19876 | 9993 | 30825 | 7910 | 13898 | 7649 |
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