DBNascent | Samples

SRR6904125,SRR6904126,SRR6904127,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR6904125	164	Aprile-garcia2019nascent	PRO-seq	ligation	control	True	3	1
SRR6904126	165	Aprile-garcia2019nascent	PRO-seq	ligation	control	True	3	2
SRR6904127	166	Aprile-garcia2019nascent	PRO-seq	ligation	control	True	2	3
SRR6904128	167	Aprile-garcia2019nascent	PRO-seq	ligation	control	True	1	4
SRR6904129	168	Aprile-garcia2019nascent	PRO-seq	ligation	experimental	False	3	1
SRR6904130	169	Aprile-garcia2019nascent	PRO-seq	ligation	experimental	False	3	2
SRR6904131	170	Aprile-garcia2019nascent	PRO-seq	ligation	experimental	False	2	3
SRR6904132	171	Aprile-garcia2019nascent	PRO-seq	ligation	experimental	False	1	4

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR6904125	H. sapiens	cell line	HEK293T Flp-In
SRR6904126	H. sapiens	cell line	HEK293T Flp-In
SRR6904127	H. sapiens	cell line	HEK293T Flp-In
SRR6904128	H. sapiens	cell line	HEK293T Flp-In
SRR6904129	H. sapiens	cell line	HEK293T Flp-In
SRR6904130	H. sapiens	cell line	HEK293T Flp-In
SRR6904131	H. sapiens	cell line	HEK293T Flp-In
SRR6904132	H. sapiens	cell line	HEK293T Flp-In

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR6904125	no treatment		None	None	None
SRR6904126	no treatment		None	None	None
SRR6904127	no treatment		None	None	None
SRR6904128	no treatment		None	None	None
SRR6904129	treatment	heat shock (43 Celsius)	-90 min	0 min	90 min
SRR6904130	treatment	heat shock (43 Celsius)	-90 min	0 min	90 min
SRR6904131	treatment	heat shock (43 Celsius)	-90 min	0 min	90 min
SRR6904132	treatment	heat shock (43 Celsius)	-90 min	0 min	90 min

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR6904125	75	11,461,592	0.27708	0.9291	4.31638	0.71342	3	2
SRR6904126	75	10,205,384	0.31794	0.9128	5.08772	0.66326	3	3
SRR6904127	50	16,302,394	0.34444	0.8937	4.36601	0.67199	2	2
SRR6904128	75	39,133,326	0.43107	0.9104	4.81513	0.6861	1	2
SRR6904129	75	11,537,564	0.3081	0.9324	6.71642	0.67326	3	3
SRR6904130	75	10,666,298	0.29075	0.9292	6.04717	0.68632	3	3
SRR6904131	50	18,881,509	0.34987	0.8979	7.3805	0.68764	2	4
SRR6904132	75	34,844,169	0.39193	0.9195	6.39302	0.73494	1	3

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR6904125	26885	15647	9341	2744	17020	9962	5385	1926
SRR6904126	24125	13867	8415	2520	17267	10625	5327	1880
SRR6904127	28700	14705	10705	4091	21420	11219	7459	3207
SRR6904128	37278	19814	13103	4997	23247	8827	8851	4258
SRR6904129	31598	15868	12657	4128	24049	10185	9744	3746
SRR6904130	30060	14878	12164	4008	23997	10669	9728	3596
SRR6904131	37661	16233	15535	6339	29358	9038	13001	5939
SRR6904132	44604	16029	18668	9487	34677	8963	15966	8296