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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR10906603	187	Barbieri2020rapid	GRO-seq variant	random primed	control	True	4	1
SRR10906604	188	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	2	1
SRR10906605	189	Barbieri2020rapid	GRO-seq variant	random primed	control	True	3	2
SRR10906606	190	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	4	2
SRR10915520	191	Barbieri2020rapid	GRO-seq variant	random primed	control	True	3	1
SRR10915521	192	Barbieri2020rapid	GRO-seq variant	random primed	control	True	3	1
SRR10915522	193	Barbieri2020rapid	GRO-seq variant	random primed	control	True	3	1
SRR10915523	194	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	5	1
SRR10915524	195	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	4	1
SRR10915525	196	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	4	1
SRR10915526	197	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	5	1
SRR10915527	198	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	4	1
SRR10915528	199	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	4	1
SRR10915533	200	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	2	1
SRR12634522	201	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	4	1
SRR12634523	202	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	4	1
SRR12634524	203	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	4	1
SRR12634525	204	Barbieri2020rapid	GRO-seq variant	random primed	experimental	False	4	1
SRR12634526	205	Barbieri2020rapid	GRO-seq variant	random primed	control	True	4	1
SRR12634527	206	Barbieri2020rapid	GRO-seq variant	random primed	control	True	5	1
SRR12634528	207	Barbieri2020rapid	GRO-seq variant	random primed	control	True	5	2
SRR12634529	208	Barbieri2020rapid	GRO-seq variant	random primed	control	True	4	1
SRR12634530	209	Barbieri2020rapid	GRO-seq variant	random primed	control	True	3	1
SRR12650990	210	Barbieri2020rapid	GRO-seq variant	random primed	control	True	5	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR10906603	H. sapiens	cell line	THP1
SRR10906604	H. sapiens	cell line	THP1
SRR10906605	H. sapiens	cell line	THP1
SRR10906606	H. sapiens	cell line	THP1
SRR10915520	H. sapiens	cell line	HeLa
SRR10915521	H. sapiens	cell line	HeLa
SRR10915522	H. sapiens	cell line	HeLa
SRR10915523	H. sapiens	cell line	HeLa
SRR10915524	H. sapiens	cell line	HeLa
SRR10915525	H. sapiens	cell line	HeLa
SRR10915526	H. sapiens	cell line	HeLa
SRR10915527	H. sapiens	cell line	HeLa
SRR10915528	H. sapiens	cell line	HeLa
SRR10915533	H. sapiens	cell line	THP1
SRR12634522	H. sapiens	cell line	THP1
SRR12634523	H. sapiens	cell line	THP1
SRR12634524	H. sapiens	cell line	THP1
SRR12634525	H. sapiens	cell line	THP1
SRR12634526	H. sapiens	cell line	iPSC	SV20
SRR12634527	H. sapiens	cell line	iPSC	SV20
SRR12634528	H. sapiens	cell line	iPSC	SV20
SRR12634529	H. sapiens	cell line	iPSC	SV20
SRR12634530	H. sapiens	cell line	HeLa
SRR12650990	H. sapiens	cell line	iPSC	SV20

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR10906603	no treatment		None	None	None
SRR10906604	treatment	lipopolysaccharide (5 microg/mL)	-4 hr	0 hr	4 hr
SRR10906605	no treatment		None	None	None
SRR10906606	treatment	lipopolysaccharide (5 microg/mL)	-4 hr	0 hr	4 hr
SRR10915520	no treatment		None	None	None
SRR10915521	no treatment		None	None	None
SRR10915522	no treatment		None	None	None
SRR10915523	treatment	EGF (100 ng/mL)	-15 min	0 min	15 min
SRR10915524	treatment	EGF (100 ng/mL)	-15 min	0 min	15 min
SRR10915525	treatment	EGF (100 ng/mL)	-15 min	0 min	15 min
SRR10915526	treatment	EGF (100 ng/mL)	-15 min	0 min	15 min
SRR10915527	treatment	EGF (100 ng/mL)	-15 min	0 min	15 min
SRR10915528	treatment	EGF (100 ng/mL)	-15 min	0 min	15 min
SRR10915533	treatment	lipopolysaccharide (5 microg/mL)	-4 hr	0 hr	4 hr
SRR12634522	treatment	flavopiridol (2 microM)	-2 hr	0 hr	2 hr
SRR12634523	treatment	flavopiridol (2 microM)	-125 min	-5 min	2 hr
	treatment	lipopolysaccharide (5 microg/mL)	-5 min	0 min	5 min
SRR12634524	treatment	flavopiridol (2 microM)	-135 min	-15 min	2 hr
	treatment	lipopolysaccharide (5 microg/mL)	-15 min	0 min	15 min
SRR12634525	treatment	flavopiridol (2 microM)	-150 min	-30 min	2 hr
	treatment	lipopolysaccharide (5 microg/mL)	-30 min	0 min	30 min
SRR12634526	no treatment		None	None	None
SRR12634527	no treatment		None	None	None
SRR12634528	no treatment		None	None	None
SRR12634529	no treatment		None	None	None
SRR12634530	no treatment		None	None	None
SRR12650990	no treatment		None	None	None

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR10906603	35	37,179,545	0.83694	0.7649	2.91405	0.26007	4	1
SRR10906604	35	42,614,486	0.51259	0.7469	2.59893	0.56738	2	1
SRR10906605	35	28,991,487	0.68673	0.8398	4.12361	0.25911	3	2
SRR10906606	35	29,769,172	0.71071	0.8995	4.69551	0.17896	4	2
SRR10915520	35	47,065,415	0.59048	0.9575	5.88353	0.33936	3	3
SRR10915521	35	51,625,818	0.59811	0.9387	6.03995	0.34092	3	3
SRR10915522	35	43,022,150	0.73754	0.9588	7.81089	0.23063	3	4
SRR10915523	35	33,262,339	0.84425	0.5349	4.56169	0.04761	5	2
SRR10915524	35	27,014,808	0.82358	0.7464	4.73925	0.07436	4	2
SRR10915525	35	34,465,078	0.83639	0.883	6.36898	0.07208	4	3
SRR10915526	35	57,534,480	0.96337	0.7438	4.47009	0.02337	5	2
SRR10915527	35	28,828,124	0.87121	0.8497	6.97137	0.06472	4	3
SRR10915528	35	56,832,903	0.80761	0.5394	4.42642	0.25081	4	2
SRR10915533	35	40,739,404	0.45754	0.9056	3.34339	0.42769	2	2
SRR12634522	35	24,133,071	0.70087	0.9222	3.36746	0.18151	4	2
SRR12634523	35	8,541,132	0.47901	0.9477	5.81148	0.28615	4	3
SRR12634524	35	14,808,030	0.7546	0.9665	6.39245	0.10695	4	3
SRR12634525	35	24,292,989	0.77604	0.9597	4.27966	0.12745	4	2
SRR12634526	35	30,293,464	0.78575	0.9545	5.82857	0.09871	4	3
SRR12634527	35	35,347,875	0.8475	0.9634	5.81784	0.04691	5	3
SRR12634528	35	17,485,512	0.8464	0.962	9.0647	0.04066	5	5
SRR12634529	35	29,609,032	0.83301	0.9656	8.67111	0.05925	4	4
SRR12634530	35	10,890,049	0.32029	0.9672	5.47744	0.47734	3	3
SRR12650990	35	9,115	0.95868	0.8058	1.0	0.00112	5	1

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR10906603	None	None	None	None	None	None	None	None
SRR10906604	None	None	None	None	None	None	None	None
SRR10906605	None	None	None	None	None	None	None	None
SRR10906606	None	None	None	None	None	None	None	None
SRR10915520	None	None	None	None	None	None	None	None
SRR10915521	None	None	None	None	None	None	None	None
SRR10915522	None	None	None	None	None	None	None	None
SRR10915523	None	None	None	None	None	None	None	None
SRR10915524	None	None	None	None	None	None	None	None
SRR10915525	None	None	None	None	None	None	None	None
SRR10915526	None	None	None	None	None	None	None	None
SRR10915527	None	None	None	None	None	None	None	None
SRR10915528	9352	2755	3978	1270	4108	1719	1534	700
SRR10915533	None	None	None	None	None	None	None	None
SRR12634522	None	None	None	None	None	None	None	None
SRR12634523	None	None	None	None	None	None	None	None
SRR12634524	None	None	None	None	None	None	None	None
SRR12634525	None	None	None	None	None	None	None	None
SRR12634526	None	None	None	None	None	None	None	None
SRR12634527	None	None	None	None	None	None	None	None
SRR12634528	None	None	None	None	None	None	None	None
SRR12634529	None	None	None	None	None	None	None	None
SRR12634530	None	None	None	None	None	None	None	None
SRR12650990	None	None	None	None	None	None	None	None