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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR8478992	215	Beckedorff2020human	PRO-seq	ligation	control	False	1	1
SRR8478993	216	Beckedorff2020human	PRO-seq	ligation	control	False	1	2
SRR8478994	217	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	1
SRR8478995	218	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	2
SRR8478996	219	Beckedorff2020human	PRO-seq	ligation	control	False	2	1
SRR8478997	220	Beckedorff2020human	PRO-seq	ligation	control	False	1	2
SRR8478998	221	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	1
SRR8478999	222	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	2
SRR8479000	223	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	1
SRR8479001	224	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	2
SRR8479002	225	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	1
SRR8479003	226	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	2
SRR8479004	227	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	1
SRR8479005	228	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	2
SRR8479006	229	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	1
SRR8479007	230	Beckedorff2020human	PRO-seq	ligation	experimental	False	1	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR8478992	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)
SRR8478993	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)
SRR8478994	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)
SRR8478995	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)
SRR8478996	H. sapiens	cell line	HeLa			dox-inducible shRNA control (stable)
SRR8478997	H. sapiens	cell line	HeLa			dox-inducible shRNA control (stable)
SRR8478998	H. sapiens	cell line	HeLa			dox-inducible shRNA control (stable)
SRR8478999	H. sapiens	cell line	HeLa			dox-inducible shRNA control (stable)
SRR8479000	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)	Ints11 exogenous
SRR8479001	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)	Ints11 exogenous
SRR8479002	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)	Ints11 exogenous
SRR8479003	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)	Ints11 exogenous
SRR8479004	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)	Ints11 E203Q exogenous
SRR8479005	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)	Ints11 E203Q exogenous
SRR8479006	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)	Ints11 E203Q exogenous
SRR8479007	H. sapiens	cell line	HeLa			dox-inducible shRNA Ints11 endogenous (stable)	Ints11 E203Q exogenous

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR8478992	no treatment		None	None	None
SRR8478993	no treatment		None	None	None
SRR8478994	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR8478995	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR8478996	no treatment		None	None	None
SRR8478997	no treatment		None	None	None
SRR8478998	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR8478999	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR8479000	no treatment		None	None	None
SRR8479001	no treatment		None	None	None
SRR8479002	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR8479003	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR8479004	no treatment		None	None	None
SRR8479005	no treatment		None	None	None
SRR8479006	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day
SRR8479007	treatment	doxycycline (1 microg/mL)	-3 day	0 day	3 day

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR8478992	35	104,486,114	0.47144	0.8906	3.40775	0.76453	1	2
SRR8478993	35	76,619,560	0.34915	0.8932	2.98372	0.81279	1	1
SRR8478994	35	117,949,336	0.44698	0.8992	3.45633	0.80118	1	2
SRR8478995	66	85,716,272	0.32914	0.8745	2.89863	0.8328	1	2
SRR8478996	35	136,341,468	0.5469	0.8876	3.35155	0.73239	2	2
SRR8478997	44	64,865,862	0.34918	0.8877	2.86398	0.7981	1	1
SRR8478998	35	133,314,870	0.49862	0.8862	3.09514	0.76776	1	2
SRR8478999	39	65,720,784	0.31946	0.8692	2.58507	0.83217	1	1
SRR8479000	35	82,734,226	0.44085	0.7533	3.31967	0.75201	1	2
SRR8479001	35	127,695,039	0.44314	0.8948	2.88514	0.81642	1	1
SRR8479002	35	161,313,921	0.47935	0.8357	2.97664	0.78389	1	1
SRR8479003	35	141,052,575	0.48072	0.8459	3.02929	0.76889	1	2
SRR8479004	35	123,042,009	0.43156	0.8416	2.94626	0.80026	1	1
SRR8479005	35	93,505,586	0.42323	0.7651	3.16117	0.77208	1	2
SRR8479006	35	162,802,108	0.4699	0.7576	3.03292	0.79762	1	2
SRR8479007	35	164,523,082	0.46604	0.8305	3.03291	0.8084	1	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR8478992	56354	20919	19259	16700	48475	8610	21936	15994
SRR8478993	49880	19942	16425	13707	38617	8195	16905	11847
SRR8478994	74441	18575	26950	26987	57754	8702	27156	20060
SRR8478995	69251	18366	24309	24243	46925	8450	21506	15450
SRR8478996	52097	20236	17869	14659	48202	8415	22473	15432
SRR8478997	46650	19485	15956	11787	36392	8400	16283	10371
SRR8478998	61410	20095	21198	20417	59139	8560	27385	21002
SRR8478999	47841	17988	16480	13451	36280	8014	15868	10902
SRR8479000	52996	19024	19318	14294	37641	8303	16195	11438
SRR8479001	54481	18392	18800	16698	49400	8340	22199	16887
SRR8479002	61813	19498	21472	19750	53543	8599	24218	18643
SRR8479003	60336	19190	21222	18861	48974	8355	22020	16578
SRR8479004	56694	18741	19943	17718	49241	8553	21904	16807
SRR8479005	52082	18140	18539	15032	39673	8350	17203	12426
SRR8479006	75657	18880	28002	26305	55617	8730	25274	19532
SRR8479007	76356	18464	27995	27599	60865	9036	27913	21855