DBNascent | Samples

SRR5379790,SRR5379791,SRR5379792,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5379790	440	Chen2017rchip	GRO-seq	circularization	control	True	4	1
SRR5379791	441	Chen2017rchip	GRO-seq	circularization	control	True	4	2
SRR5379792	442	Chen2017rchip	GRO-seq	circularization	experimental	False	4	1
SRR5379793	443	Chen2017rchip	GRO-seq	circularization	experimental	False	4	2
SRR5379794	444	Chen2017rchip	GRO-seq	circularization	experimental	False	4	1
SRR5379795	445	Chen2017rchip	GRO-seq	circularization	experimental	False	4	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5379790	H. sapiens	cell line	HEK293T
SRR5379791	H. sapiens	cell line	HEK293T
SRR5379792	H. sapiens	cell line	HEK293T
SRR5379793	H. sapiens	cell line	HEK293T
SRR5379794	H. sapiens	cell line	HEK293T
SRR5379795	H. sapiens	cell line	HEK293T

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5379790	no treatment		None	None	None
SRR5379791	no treatment		None	None	None
SRR5379792	treatment	DRB (100 microM)	-2 hr	0 hr	2 hr
SRR5379793	treatment	DRB (100 microM)	-2 hr	0 hr	2 hr
SRR5379794	treatment	DRB (100 microM)	-150 min	-30 min	2 hr
SRR5379795	treatment	DRB (100 microM)	-150 min	-30 min	2 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5379790	40	41,003,654	0.84933	0.8839	4.54233	0.16854	4	2
SRR5379791	40	16,127,914	0.88308	0.8216	4.42754	0.12066	4	2
SRR5379792	40	19,006,952	0.90207	0.9315	5.63946	0.10787	4	3
SRR5379793	40	14,068,232	0.90953	0.7984	4.71277	0.09258	4	2
SRR5379794	40	130,428,487	0.83462	0.9126	3.42788	0.20766	4	2
SRR5379795	40	13,615,285	0.89403	0.7574	3.69444	0.10742	4	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5379790	14068	8372	4662	735	9861	6618	2399	1019
SRR5379791	5896	3934	1623	257	4227	3333	749	304
SRR5379792	11414	6314	4703	513	10379	6815	3338	688
SRR5379793	8087	4996	3047	362	7449	5504	1948	448
SRR5379794	23075	12131	8420	2056	17975	7698	7179	2788
SRR5379795	1906	1065	609	122	1163	690	311	228