Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR7722984,SRR7722985,SRR7722986
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR7722984 | 601 | Delgado-benito2018chromatin | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR7722985 | 602 | Delgado-benito2018chromatin | GRO-seq | circularization | experimental | False | 3 | 2 |
| SRR7722986 | 603 | Delgado-benito2018chromatin | GRO-seq | circularization | control | False | 3 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR7722984 | M. musculus | primary cell | B cell | Zmynd8 fl/fl; Cd19-Cre | |||
| SRR7722985 | M. musculus | primary cell | B cell | Zmynd8 fl/fl; Cd19-Cre | |||
| SRR7722986 | M. musculus | primary cell | B cell | Zmynd8 fl/fl |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR7722984 | treatment | interleukin-4 (5 ng/mL) | -1 day | 0 day | 1 day |
| treatment | lipopolysaccharide (25 microg/mL) | -1 day | 0 day | 1 day | |
| SRR7722985 | treatment | interleukin-4 (5 ng/mL) | -1 day | 0 day | 1 day |
| treatment | lipopolysaccharide (25 microg/mL) | -1 day | 0 day | 1 day | |
| SRR7722986 | treatment | interleukin-4 (5 ng/mL) | -1 day | 0 day | 1 day |
| treatment | lipopolysaccharide (25 microg/mL) | -1 day | 0 day | 1 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR7722984 | 50 | 147,798,953 | 0.78114 | 0.6987 | 3.6005 | 0.2739 | 3 | 2 |
| SRR7722985 | 50 | 157,832,147 | 0.77279 | 0.6979 | 3.68908 | 0.29416 | 3 | 2 |
| SRR7722986 | 50 | 113,217,607 | 0.78891 | 0.6769 | 3.6199 | 0.25208 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR7722984 | 9992 | 4273 | 3365 | 658 | 13158 | 4368 | 4096 | 3034 |
| SRR7722985 | 9490 | 4054 | 3244 | 595 | 13995 | 4490 | 4491 | 3308 |
| SRR7722986 | 9231 | 4167 | 2968 | 428 | 10830 | 4242 | 3041 | 2305 |
Top