DBNascent | Samples

SRR9304732,SRR9304733,SRR9304734,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR9304732	768	Fant2020tfiid	PRO-seq	ligation	control	False	4	1
SRR9304733	769	Fant2020tfiid	PRO-seq	ligation	control	False	4	2
SRR9304734	770	Fant2020tfiid	PRO-seq	ligation	control	False	4	3
SRR9304735	771	Fant2020tfiid	PRO-seq	ligation	experimental	False	3	1
SRR9304736	772	Fant2020tfiid	PRO-seq	ligation	experimental	False	4	2
SRR9304737	773	Fant2020tfiid	PRO-seq	ligation	experimental	False	4	3
SRR9304728	764	Fant2020tfiid	PRO-seq	ligation	experimental	False	2	1
SRR9304729	765	Fant2020tfiid	PRO-seq	ligation	experimental	False	2	2
SRR9304730	766	Fant2020tfiid	PRO-seq	ligation	control	True	2	1
SRR9304731	767	Fant2020tfiid	PRO-seq	ligation	control	True	2	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR9304732	D. melanogaster	cell line	S2
SRR9304733	D. melanogaster	cell line	S2
SRR9304734	D. melanogaster	cell line	S2
SRR9304735	D. melanogaster	cell line	S2
SRR9304736	D. melanogaster	cell line	S2
SRR9304737	D. melanogaster	cell line	S2
SRR9304728	H. sapiens	cell line	HCT116
SRR9304729	H. sapiens	cell line	HCT116
SRR9304730	H. sapiens	cell line	HCT116
SRR9304731	H. sapiens	cell line	HCT116

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR9304732	treatment	dsRNA LacI (30 microg)	-60 hr	0 hr	60 hr
SRR9304733	treatment	dsRNA LacI (30 microg)	-60 hr	0 hr	60 hr
SRR9304734	treatment	dsRNA LacI (30 microg)	-60 hr	0 hr	60 hr
SRR9304735	treatment	dsRNA Taf1 (30 microg)	-60 hr	0 hr	60 hr
SRR9304736	treatment	dsRNA Taf1 (30 microg)	-60 hr	0 hr	60 hr
SRR9304737	treatment	dsRNA Taf1 (30 microg)	-60 hr	0 hr	60 hr
SRR9304728	treatment	anti-TAF1 C413 antibody	-1 hr	0 hr	1 hr
SRR9304729	treatment	anti-TAF1 C413 antibody	-1 hr	0 hr	1 hr
SRR9304730	treatment	mock treatment	-1 hr	0 hr	1 hr
SRR9304731	treatment	mock treatment	-1 hr	0 hr	1 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR9304732	76	41,064,627	0.81774	0.8308	2.39055	0.24815	4	1
SRR9304733	76	43,516,764	0.85513	0.8419	1.89174	0.20498	4	1
SRR9304734	76	37,606,726	0.81313	0.8393	1.61718	0.24244	4	1
SRR9304735	76	41,543,957	0.78946	0.8298	2.86784	0.28676	3	1
SRR9304736	76	50,901,064	0.83927	0.8621	2.205	0.23064	4	1
SRR9304737	76	49,523,567	0.8358	0.8533	1.65913	0.22824	4	1
SRR9304728	76	114,912,169	0.62851	0.96	3.97863	0.69783	2	2
SRR9304729	76	105,263,543	0.58417	0.9557	4.22104	0.71718	2	2
SRR9304730	76	106,990,704	0.62287	0.9508	3.87303	0.52311	2	2
SRR9304731	76	132,287,922	0.56664	0.9545	3.33253	0.68298	2	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR9304732	None	None	None	None	None	None	None	None
SRR9304733	None	None	None	None	None	None	None	None
SRR9304734	None	None	None	None	None	None	None	None
SRR9304735	None	None	None	None	None	None	None	None
SRR9304736	None	None	None	None	None	None	None	None
SRR9304737	None	None	None	None	None	None	None	None
SRR9304728	40841	14613	15706	10500	42320	7677	20202	12326
SRR9304729	44175	14136	17271	12645	46878	7674	22355	14492
SRR9304730	38770	16993	13366	8003	31568	7644	13502	8519
SRR9304731	38880	14602	14150	9377	38933	7063	18237	11369