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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5448821	809	Fong2017rna	NET-seq	random primed	control	True	3	1
SRR5448822	810	Fong2017rna	NET-seq	random primed	control	True	2	2
SRR5448823	811	Fong2017rna	NET-seq	random primed	control	True	1	3
SRR5448824	812	Fong2017rna	NET-seq	random primed	experimental	False	3	1
SRR5448825	813	Fong2017rna	NET-seq	random primed	experimental	False	3	2
SRR5448826	814	Fong2017rna	NET-seq	random primed	experimental	False	3	3
SRR5448827	815	Fong2017rna	NET-seq	random primed	experimental	False	1	1
SRR5448828	816	Fong2017rna	NET-seq	random primed	experimental	False	4	2
SRR5448829	817	Fong2017rna	NET-seq	random primed	control	True	2	1
SRR5448830	818	Fong2017rna	NET-seq	random primed	experimental	False	2	1

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5448821	H. sapiens	cell line	HEK293T
SRR5448822	H. sapiens	cell line	HEK293T
SRR5448823	H. sapiens	cell line	HEK293T
SRR5448824	H. sapiens	cell line	HEK293T				Rpb1 R749H
SRR5448825	H. sapiens	cell line	HEK293T				Rpb1 R749H
SRR5448826	H. sapiens	cell line	HEK293T				Rpb1 R749H
SRR5448827	H. sapiens	cell line	HEK293T				Rpb1 H1108Y
SRR5448828	H. sapiens	cell line	HEK293T				Rpb1 H1108Y
SRR5448829	H. sapiens	cell line	HEK293T
SRR5448830	H. sapiens	cell line	HEK293T				Rpb1 R749H

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5448821	no treatment		None	None	None
SRR5448822	no treatment		None	None	None
SRR5448823	no treatment		None	None	None
SRR5448824	no treatment		None	None	None
SRR5448825	no treatment		None	None	None
SRR5448826	no treatment		None	None	None
SRR5448827	no treatment		None	None	None
SRR5448828	no treatment		None	None	None
SRR5448829	no treatment		None	None	None
SRR5448830	no treatment		None	None	None

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5448821	20	32,281,299	0.67664	0.8814	3.16056	0.33685	3	2
SRR5448822	35	36,996,676	0.62614	0.9493	3.15242	0.41841	2	2
SRR5448823	35	31,874,067	0.47863	0.9121	2.2884	0.56087	1	1
SRR5448824	20	29,934,613	0.67004	0.9633	3.03468	0.34273	3	2
SRR5448825	20	29,934,613	0.67004	0.9633	3.04054	0.34193	3	2
SRR5448826	151	55,161,397	0.77875	0.9625	2.82506	0.24451	3	2
SRR5448827	151	20,323,182	0.40811	0.8265	2.40685	0.61724	1	1
SRR5448828	151	43,059,733	0.80407	0.9503	2.96471	0.21699	4	2
SRR5448829	126	35,760,957	0.63524	0.9696	2.85698	0.38806	2	1
SRR5448830	126	23,543,644	0.64272	0.9458	4.50943	0.37476	2	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5448821	10728	1704	5499	961	3055	887	1132	599
SRR5448822	11217	2906	6060	589	5595	2329	2204	455
SRR5448823	None	None	None	None	6374	1294	3086	1339
SRR5448824	17157	1552	9455	2719	2709	553	902	749
SRR5448825	None	None	None	None	2711	561	889	761
SRR5448826	16809	2901	8886	1890	4602	1651	1795	686
SRR5448827	None	None	None	None	3613	442	1445	1104
SRR5448828	19169	3221	9773	2060	4074	1533	1530	534
SRR5448829	11365	2776	5904	736	5154	1785	2091	660
SRR5448830	22790	3971	11702	2235	5572	1867	2118	765