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SRR6837045,SRR6837046,SRR6837047,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR6837045 | 819 | Fonseca2019diverse | GRO-seq | ligation | experimental | False | 4 | 1 |
| SRR6837046 | 820 | Fonseca2019diverse | GRO-seq | ligation | experimental | False | 4 | 2 |
| SRR6837047 | 821 | Fonseca2019diverse | GRO-seq | ligation | control | True | 3 | 1 |
| SRR6837048 | 822 | Fonseca2019diverse | GRO-seq | ligation | control | True | 3 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR6837045 | M. musculus | primary cell | peritoneal macrophage | C57Bl/6EiJ | |||
| SRR6837046 | M. musculus | primary cell | peritoneal macrophage | C57Bl/6EiJ | |||
| SRR6837047 | M. musculus | primary cell | peritoneal macrophage | C57Bl/6EiJ | |||
| SRR6837048 | M. musculus | primary cell | peritoneal macrophage | C57Bl/6EiJ |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR6837045 | treatment | Kdo2-Lipid A (100 ng/mL) | -1 hr | 0 hr | 1 hr |
| SRR6837046 | treatment | Kdo2-Lipid A (100 ng/mL) | -1 hr | 0 hr | 1 hr |
| SRR6837047 | vehicle | PBS | -1 hr | 0 hr | 1 hr |
| SRR6837048 | vehicle | PBS | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR6837045 | 50 | 9,859,704 | 0.40205 | 0.636 | 1.61145 | 0.56311 | 4 | 1 |
| SRR6837046 | 50 | 8,681,113 | 0.45094 | 0.6076 | 1.75 | 0.50906 | 4 | 1 |
| SRR6837047 | 50 | 12,777,826 | 0.33688 | 0.6694 | 1.74775 | 0.6523 | 3 | 1 |
| SRR6837048 | 50 | 13,728,211 | 0.37772 | 0.6591 | 1.7619 | 0.61645 | 3 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR6837045 | 9492 | 3461 | 3468 | 1740 | 7192 | 3371 | 2058 | 1222 |
| SRR6837046 | 7651 | 2810 | 2810 | 1257 | 5548 | 2764 | 1451 | 918 |
| SRR6837047 | 15816 | 5542 | 5289 | 3616 | 12849 | 5556 | 3593 | 2764 |
| SRR6837048 | 16587 | 5610 | 5844 | 3758 | 13208 | 5678 | 3675 | 2890 |
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