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SRR1519032,SRR1519033,SRR1519034,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1519032 | 823 | Franco2015tnfalpha | GRO-seq | circularization | control | True | 1 | 1 |
| SRR1519033 | 824 | Franco2015tnfalpha | GRO-seq | circularization | control | True | 1 | 2 |
| SRR1519034 | 825 | Franco2015tnfalpha | GRO-seq | circularization | control | True | 1 | 3 |
| SRR1519035 | 826 | Franco2015tnfalpha | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR1519036 | 827 | Franco2015tnfalpha | GRO-seq | circularization | experimental | False | 1 | 2 |
| SRR1519037 | 828 | Franco2015tnfalpha | GRO-seq | circularization | experimental | False | 2 | 3 |
| SRR1519038 | 829 | Franco2015tnfalpha | GRO-seq | circularization | experimental | False | 1 | 1 |
| SRR1519039 | 830 | Franco2015tnfalpha | GRO-seq | circularization | experimental | False | 1 | 2 |
| SRR1519040 | 831 | Franco2015tnfalpha | GRO-seq | circularization | experimental | False | 1 | 3 |
| SRR1519041 | 832 | Franco2015tnfalpha | GRO-seq | circularization | experimental | False | 1 | 1 |
| SRR1519042 | 833 | Franco2015tnfalpha | GRO-seq | circularization | experimental | False | 1 | 2 |
| SRR1519043 | 834 | Franco2015tnfalpha | GRO-seq | circularization | experimental | False | 1 | 3 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1519032 | H. sapiens | cell line | MCF7 | ||||
| SRR1519033 | H. sapiens | cell line | MCF7 | ||||
| SRR1519034 | H. sapiens | cell line | MCF7 | ||||
| SRR1519035 | H. sapiens | cell line | MCF7 | ||||
| SRR1519036 | H. sapiens | cell line | MCF7 | ||||
| SRR1519037 | H. sapiens | cell line | MCF7 | ||||
| SRR1519038 | H. sapiens | cell line | MCF7 | ||||
| SRR1519039 | H. sapiens | cell line | MCF7 | ||||
| SRR1519040 | H. sapiens | cell line | MCF7 | ||||
| SRR1519041 | H. sapiens | cell line | MCF7 | ||||
| SRR1519042 | H. sapiens | cell line | MCF7 | ||||
| SRR1519043 | H. sapiens | cell line | MCF7 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1519032 | vehicle | ethanol | -40 min | 0 min | 40 min |
| SRR1519033 | vehicle | ethanol | -40 min | 0 min | 40 min |
| SRR1519034 | vehicle | ethanol | -40 min | 0 min | 40 min |
| SRR1519035 | treatment | 17-beta-estradiol (100 nM) | -40 min | 0 min | 40 min |
| SRR1519036 | treatment | 17-beta-estradiol (100 nM) | -40 min | 0 min | 40 min |
| SRR1519037 | treatment | 17-beta-estradiol (100 nM) | -40 min | 0 min | 40 min |
| SRR1519038 | treatment | TNF-alpha (25 ng/mL) | -40 min | 0 min | 40 min |
| SRR1519039 | treatment | TNF-alpha (25 ng/mL) | -40 min | 0 min | 40 min |
| SRR1519040 | treatment | TNF-alpha (25 ng/mL) | -40 min | 0 min | 40 min |
| SRR1519041 | treatment | 17-beta-estradiol (100 nM) | -40 min | 0 min | 40 min |
| treatment | TNF-alpha (25 ng/mL) | -40 min | 0 min | 40 min | |
| SRR1519042 | treatment | 17-beta-estradiol (100 nM) | -40 min | 0 min | 40 min |
| treatment | TNF-alpha (25 ng/mL) | -40 min | 0 min | 40 min | |
| SRR1519043 | treatment | 17-beta-estradiol (100 nM) | -40 min | 0 min | 40 min |
| treatment | TNF-alpha (25 ng/mL) | -40 min | 0 min | 40 min |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1519032 | 50 | 27,338,225 | 0.48914 | 0.8821 | 5.97738 | 0.58069 | 1 | 3 |
| SRR1519033 | 50 | 20,926,011 | 0.41424 | 0.8706 | 5.54038 | 0.63068 | 1 | 3 |
| SRR1519034 | 50 | 26,977,087 | 0.36028 | 0.8915 | 2.89615 | 0.73166 | 1 | 3 |
| SRR1519035 | 50 | 18,978,442 | 0.39858 | 0.8598 | 4.21504 | 0.63603 | 2 | 3 |
| SRR1519036 | 50 | 28,946,432 | 0.3751 | 0.8968 | 2.79867 | 0.73104 | 1 | 3 |
| SRR1519037 | 50 | 19,869,677 | 0.41488 | 0.8824 | 4.36706 | 0.64991 | 2 | 3 |
| SRR1519038 | 50 | 20,382,392 | 0.41294 | 0.8608 | 4.37189 | 0.62672 | 1 | 3 |
| SRR1519039 | 50 | 23,706,691 | 0.38141 | 0.9005 | 3.3085 | 0.69924 | 1 | 3 |
| SRR1519040 | 50 | 23,068,383 | 0.37236 | 0.8973 | 3.17634 | 0.70969 | 1 | 3 |
| SRR1519041 | 50 | 21,889,080 | 0.41082 | 0.8524 | 3.67394 | 0.63848 | 1 | 3 |
| SRR1519042 | 50 | 22,415,894 | 0.36325 | 0.8951 | 3.68301 | 0.70897 | 1 | 3 |
| SRR1519043 | 50 | 23,914,066 | 0.35904 | 0.8898 | 2.8666 | 0.72668 | 1 | 3 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1519032 | 23669 | 2267 | 15875 | 2458 | 23818 | 1958 | 16148 | 2775 |
| SRR1519033 | 21396 | 1774 | 14586 | 2205 | 21176 | 1334 | 14727 | 2499 |
| SRR1519034 | 25785 | 2261 | 18051 | 3021 | 29537 | 1781 | 21583 | 3852 |
| SRR1519035 | 20647 | 1681 | 14531 | 2050 | 18695 | 1223 | 13399 | 2131 |
| SRR1519036 | 25674 | 2204 | 17815 | 2824 | 30923 | 1747 | 22216 | 4074 |
| SRR1519037 | 21306 | 2112 | 14691 | 2181 | 18109 | 1619 | 12608 | 2290 |
| SRR1519038 | 21303 | 1822 | 14587 | 2263 | 20340 | 1400 | 14265 | 2448 |
| SRR1519039 | 20884 | 1708 | 14339 | 2214 | 21810 | 1260 | 15313 | 2710 |
| SRR1519040 | 21612 | 1676 | 14972 | 2318 | 23627 | 1208 | 16627 | 2919 |
| SRR1519041 | 22993 | 1729 | 16279 | 2491 | 23390 | 1318 | 17148 | 2857 |
| SRR1519042 | 20772 | 1650 | 14176 | 2161 | 19710 | 1227 | 13720 | 2444 |
| SRR1519043 | 23335 | 1839 | 16196 | 2575 | 23429 | 1299 | 16608 | 3065 |
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