DBNascent | Samples

SRR828695,SRR828696,SRR828729

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	QC score	Replicate	Outlier?
SRR828695	871	Galbraith2013hif1a	GRO-seq	circularization	control	4	1	No
SRR828696	872	Galbraith2013hif1a	GRO-seq	circularization	control	4	2	No
SRR828729	873	Galbraith2013hif1a	GRO-seq	circularization	control	3	3	No

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR828695	H. sapiens	cell line	HCT116
SRR828696	H. sapiens	cell line	HCT116
SRR828729	H. sapiens	cell line	HCT116

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR828695	vehicle	DMSO	-1 hr	0 hr	1 hr
SRR828696	vehicle	DMSO	-1 hr	0 hr	1 hr
SRR828729	vehicle	DMSO	-1 hr	0 hr	1 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR828695	50	54,636,150	0.88664	0.8586	3.72117	0.31956	4	2
SRR828696	50	198,849,055	0.83445	0.8927	2.57436	0.65601	4	1
SRR828729	50	136,926,976	0.73197	0.9291	3.53941	0.55826	3	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR828695	23806	11340	8782	3042	15668	7306	5114	2542
SRR828696	43099	16507	15695	9797	42349	8378	19405	12934
SRR828729	52457	19420	19090	12787	41649	8939	18253	12995