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SRR1192053,SRR1192054,SRR1192055,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1192053 | 1078 | Jin2014chem | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR1192054 | 1079 | Jin2014chem | GRO-seq | circularization | control | True | 2 | 1 |
| SRR1192055 | 1080 | Jin2014chem | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR1192056 | 1081 | Jin2014chem | GRO-seq | circularization | experimental | False | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1192053 | H. sapiens | cell line | LNCaP | ||||
| SRR1192054 | H. sapiens | cell line | LNCaP | ||||
| SRR1192055 | H. sapiens | cell line | LNCaP | ||||
| SRR1192056 | H. sapiens | cell line | LNCaP |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1192053 | treatment | dihydrotestosterone (100 nM) | -1 hr | 0 hr | 1 hr |
| vehicle | DMSO (0.1%) | -3 hr | -1 hr | 2 hr | |
| SRR1192054 | vehicle | DMSO (0.1%) | -3 hr | -1 hr | 2 hr |
| vehicle | ethanol (0.1%) | -1 hr | 0 hr | 1 hr | |
| SRR1192055 | treatment | SD70 (10 microM) | -3 hr | -1 hr | 2 hr |
| treatment | dihydrotestosterone (100 nM) | -1 hr | 0 hr | 1 hr | |
| SRR1192056 | treatment | SD70 (10 microM) | -3 hr | -1 hr | 2 hr |
| vehicle | ethanol (0.1%) | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1192053 | 50 | 52,912,493 | 0.62055 | 0.906 | 3.02734 | 0.42704 | 2 | 2 |
| SRR1192054 | 50 | 44,031,095 | 0.6002 | 0.9088 | 2.95627 | 0.43859 | 2 | 1 |
| SRR1192055 | 50 | 44,765,767 | 0.58503 | 0.905 | 3.0974 | 0.45444 | 2 | 2 |
| SRR1192056 | 50 | 37,522,389 | 0.58737 | 0.9083 | 3.13063 | 0.44647 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1192053 | 16973 | 8478 | 6458 | 1945 | 14807 | 6969 | 5608 | 2076 |
| SRR1192054 | 16379 | 7937 | 6360 | 1886 | 13212 | 6560 | 4731 | 1845 |
| SRR1192055 | 16139 | 8148 | 6001 | 1778 | 13332 | 6501 | 4893 | 1794 |
| SRR1192056 | 15076 | 7495 | 5851 | 1560 | 12032 | 6273 | 4198 | 1516 |
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