Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ3477284,SRZ3477286,SRZ3477288,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRZ3477284 | 1180 | Kaikkonen2017genome | GRO-seq | circularization | control | True | 4 | 1 |
| SRZ3477286 | 1181 | Kaikkonen2017genome | GRO-seq | circularization | control | True | 4 | 2 |
| SRZ3477288 | 1182 | Kaikkonen2017genome | GRO-seq | circularization | control | True | 4 | 3 |
| SRZ3477290 | 1183 | Kaikkonen2017genome | GRO-seq | circularization | experimental | False | 4 | 1 |
| SRZ3477292 | 1184 | Kaikkonen2017genome | GRO-seq | circularization | experimental | False | 4 | 2 |
| SRZ3477294 | 1185 | Kaikkonen2017genome | GRO-seq | circularization | experimental | False | 4 | 3 |
| SRZ3477296 | 1186 | Kaikkonen2017genome | GRO-seq | circularization | experimental | False | 4 | 1 |
| SRZ3477298 | 1187 | Kaikkonen2017genome | GRO-seq | circularization | experimental | False | 5 | 2 |
| SRZ3477300 | 1188 | Kaikkonen2017genome | GRO-seq | circularization | experimental | False | 5 | 3 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRZ3477284 | S. scrofa | tissue | myocardium (healthy) | ||||
| SRZ3477286 | S. scrofa | tissue | myocardium (healthy) | ||||
| SRZ3477288 | S. scrofa | tissue | myocardium (healthy) | ||||
| SRZ3477290 | S. scrofa | tissue | myocardium (borderline ischemic) | ||||
| SRZ3477292 | S. scrofa | tissue | myocardium (borderline ischemic) | ||||
| SRZ3477294 | S. scrofa | tissue | myocardium (borderline ischemic) | ||||
| SRZ3477296 | S. scrofa | tissue | myocardium (ischemic) | ||||
| SRZ3477298 | S. scrofa | tissue | myocardium (ischemic) | ||||
| SRZ3477300 | S. scrofa | tissue | myocardium (ischemic) |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRZ3477284 | no treatment | None | None | None | |
| SRZ3477286 | no treatment | None | None | None | |
| SRZ3477288 | no treatment | None | None | None | |
| SRZ3477290 | no treatment | None | None | None | |
| SRZ3477292 | no treatment | None | None | None | |
| SRZ3477294 | no treatment | None | None | None | |
| SRZ3477296 | no treatment | None | None | None | |
| SRZ3477298 | no treatment | None | None | None | |
| SRZ3477300 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRZ3477284 | 51 | 22,327,630 | 0.92431 | 0.8417 | 92.3116 | 0.11313 | 4 | 5 |
| SRZ3477286 | 51 | 13,310,837 | 0.86101 | 0.848 | 15.3616 | 0.16365 | 4 | 5 |
| SRZ3477288 | 51 | 20,615,484 | 0.82513 | 0.8647 | 14.5537 | 0.27562 | 4 | 5 |
| SRZ3477290 | 51 | 16,108,319 | 0.86604 | 0.8625 | 49.209 | 0.17297 | 4 | 5 |
| SRZ3477292 | 51 | 27,178,877 | 0.85828 | 0.8607 | 27.613 | 0.26217 | 4 | 5 |
| SRZ3477294 | 51 | 10,376,205 | 0.86796 | 0.8373 | 28.5465 | 0.12729 | 4 | 5 |
| SRZ3477296 | 51 | 22,551,074 | 0.93322 | 0.8557 | 136.739 | 0.09344 | 4 | 5 |
| SRZ3477298 | 51 | 14,828,423 | 0.95666 | 0.8175 | 110.969 | 0.05239 | 5 | 5 |
| SRZ3477300 | 51 | 10,506,678 | 0.95085 | 0.8319 | 65.1992 | 0.04833 | 5 | 5 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRZ3477284 | None | None | None | None | None | None | None | None |
| SRZ3477286 | None | None | None | None | None | None | None | None |
| SRZ3477288 | None | None | None | None | None | None | None | None |
| SRZ3477290 | None | None | None | None | None | None | None | None |
| SRZ3477292 | None | None | None | None | None | None | None | None |
| SRZ3477294 | None | None | None | None | None | None | None | None |
| SRZ3477296 | None | None | None | None | None | None | None | None |
| SRZ3477298 | None | None | None | None | None | None | None | None |
| SRZ3477300 | None | None | None | None | None | None | None | None |
Top