Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR2432159,SRR2432160,SRR2432161,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR2432159 | 1189 | Kantidakis2016mutation | GRO-seq | ligation | control | False | 1 | 1 |
| SRR2432160 | 1190 | Kantidakis2016mutation | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR2432161 | 1191 | Kantidakis2016mutation | GRO-seq | ligation | experimental | False | 1 | 2 |
| SRR2432162 | 1192 | Kantidakis2016mutation | GRO-seq | ligation | control | False | 1 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR2432159 | M. musculus | cell line | MEF | Mll2 fl/fl; tamoxifen-inducible Cre | |||
| SRR2432160 | M. musculus | cell line | MEF | Mll2 fl/fl; tamoxifen-inducible Cre | |||
| SRR2432161 | M. musculus | cell line | MEF | Mll2 fl/fl; tamoxifen-inducible Cre | |||
| SRR2432162 | M. musculus | cell line | MEF | Mll2 fl/fl; tamoxifen-inducible Cre |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR2432159 | no treatment | None | None | None | |
| SRR2432160 | treatment | hydroxytamoxifen (1 microM) | -24 hr | 0 hr | 1 day |
| SRR2432161 | treatment | hydroxytamoxifen (1 microM) | -24 hr | 0 hr | 1 day |
| SRR2432162 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR2432159 | 51 | 52,616,341 | 0.45961 | 0.8161 | 12.6184 | 0.69125 | 1 | 5 |
| SRR2432160 | 51 | 51,845,090 | 0.45297 | 0.8156 | 11.2938 | 0.69891 | 1 | 5 |
| SRR2432161 | 51 | 42,570,273 | 0.48021 | 0.8095 | 12.437 | 0.64922 | 1 | 5 |
| SRR2432162 | 51 | 75,181,649 | 0.39735 | 0.883 | 8.5103 | 0.8071 | 1 | 4 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR2432159 | 31192 | 7278 | 13073 | 4755 | 24223 | 4384 | 10223 | 5151 |
| SRR2432160 | 28403 | 6991 | 11901 | 3813 | 22060 | 4324 | 9305 | 4457 |
| SRR2432161 | 29016 | 6899 | 12389 | 3734 | 21673 | 4172 | 8896 | 4161 |
| SRR2432162 | 30214 | 8898 | 10680 | 5600 | 28597 | 4651 | 12436 | 7636 |
Top