DBNascent | Samples

SRR10067473,SRR10067474,SRR10067475,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR10067473	1193	Kelly2020unpublished	PRO-seq	ligation	control	True	2	1
SRR10067474	1194	Kelly2020unpublished	PRO-seq	ligation	control	True	1	2
SRR10067475	1195	Kelly2020unpublished	PRO-seq	ligation	experimental	False	2	1
SRR10067476	1196	Kelly2020unpublished	PRO-seq	ligation	experimental	False	2	2
SRR10067477	1197	Kelly2020unpublished	PRO-seq	ligation	experimental	False	2	1
SRR10067478	1198	Kelly2020unpublished	PRO-seq	ligation	experimental	False	3	2
SRR10067479	1199	Kelly2020unpublished	PRO-seq	ligation	experimental	False	1	1
SRR10067480	1200	Kelly2020unpublished	PRO-seq	ligation	experimental	False	2	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR10067473	M. musculus	cell line	ESC	E14
SRR10067474	M. musculus	cell line	ESC	E14
SRR10067475	M. musculus	cell line	ESC	E14
SRR10067476	M. musculus	cell line	ESC	E14
SRR10067477	M. musculus	cell line	ESC	E14
SRR10067478	M. musculus	cell line	ESC	E14
SRR10067479	M. musculus	cell line	ESC	E14
SRR10067480	M. musculus	cell line	ESC	E14

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR10067473	no treatment		None	None	None
SRR10067474	no treatment		None	None	None
SRR10067475	treatment	JQ1	-2 hr	0 hr	2 hr
SRR10067476	treatment	JQ1	-2 hr	0 hr	2 hr
SRR10067477	treatment	LBH589 (50 nM)	-2 hr	0 hr	2 hr
SRR10067478	treatment	LBH589 (50 nM)	-2 hr	0 hr	2 hr
SRR10067479	treatment	LBH589 (50 nM)	-6 hr	0 hr	6 hr
SRR10067480	treatment	LBH589 (50 nM)	-6 hr	0 hr	6 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR10067473	75	41,287,389	0.58049	0.8661	2.44323	0.59621	2	1
SRR10067474	75	22,879,879	0.43942	0.8088	3.16927	0.61836	1	2
SRR10067475	75	29,467,381	0.59536	0.8261	3.21348	0.5214	2	2
SRR10067476	75	15,273,482	0.45975	0.7935	3.07904	0.55836	2	2
SRR10067477	75	50,587,627	0.611	0.8662	2.36466	0.59347	2	1
SRR10067478	75	10,248,952	0.39663	0.8125	2.80206	0.58669	3	1
SRR10067479	75	29,744,538	0.48564	0.8487	2.62258	0.62759	1	1
SRR10067480	75	42,431,955	0.58277	0.8642	2.50028	0.61925	2	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR10067473	35618	8581	13205	10316	25176	7264	7869	8281
SRR10067474	38464	9130	13643	11960	24913	8066	7352	7531
SRR10067475	24395	6448	9686	5521	18025	6275	5570	4589
SRR10067476	19538	5917	7298	4018	13376	5727	3677	2809
SRR10067477	45641	10715	15819	14713	30716	9059	9607	9947
SRR10067478	23940	7066	8316	5730	11909	6185	2517	2250
SRR10067479	47316	11357	16177	15144	27382	9206	7614	8647
SRR10067480	44436	11029	14747	14241	28909	9086	8264	9596