DBNascent | Samples

SRR352501,SRR352502,SRR352503,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR352501	1201	Khodor2011nascent	RNA-seq variant	ligation	control	True	3	1
SRR352502	1202	Khodor2011nascent	RNA-seq variant	ligation	control	True	3	2
SRR352503	1203	Khodor2011nascent	RNA-seq variant	ligation	experimental	False	4	1
SRR352504	1204	Khodor2011nascent	RNA-seq variant	ligation	experimental	False	4	2
SRR352505	1205	Khodor2011nascent	RNA-seq variant	ligation	control	True	2	1
SRR352506	1206	Khodor2011nascent	RNA-seq variant	ligation	control	True	2	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR352501	D. melanogaster	cell line	S2
SRR352502	D. melanogaster	cell line	S2
SRR352503	D. melanogaster	cell line	S2			RpII215 G3973A
SRR352504	D. melanogaster	cell line	S2			RpII215 G3973A
SRR352505	D. melanogaster	tissue	head
SRR352506	D. melanogaster	tissue	head

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR352501	no treatment		None	None	None
SRR352502	no treatment		None	None	None
SRR352503	no treatment		None	None	None
SRR352504	no treatment		None	None	None
SRR352505	no treatment		None	None	None
SRR352506	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR352501	76	14,131,821	0.53383	0.7099	3.34192	0.40088	3	2
SRR352502	76	12,111,897	0.58344	0.8816	2.87662	0.36477	3	1
SRR352503	80	24,149,922	0.84072	0.9475	6.68706	0.17506	4	3
SRR352504	80	22,503,883	0.82664	0.9369	5.34777	0.18835	4	3
SRR352505	76	17,526,397	0.63536	0.8671	2.32195	0.36033	2	1
SRR352506	76	17,607,161	0.58209	0.9069	2.17926	0.4176	2	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR352501	None	None	None	None	None	None	None	None
SRR352502	None	None	None	None	None	None	None	None
SRR352503	None	None	None	None	None	None	None	None
SRR352504	None	None	None	None	None	None	None	None
SRR352505	None	None	None	None	None	None	None	None
SRR352506	None	None	None	None	None	None	None	None