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SRR639125,SRR639126,SRR639127,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR639125 | 1380 | Kruesi2013condensin | GRO-seq | circularization | control | True | 4 | 1 |
| SRR639126 | 1381 | Kruesi2013condensin | GRO-seq | circularization | control | True | 1 | 2 |
| SRR639127 | 1382 | Kruesi2013condensin | GRO-seq | circularization | control | False | 1 | 1 |
| SRR639128 | 1383 | Kruesi2013condensin | GRO-seq | circularization | control | False | 1 | 2 |
| SRR639129 | 1384 | Kruesi2013condensin | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR639130 | 1385 | Kruesi2013condensin | GRO-seq | circularization | experimental | False | 1 | 2 |
| SRR639131 | 1386 | Kruesi2013condensin | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR639132 | 1387 | Kruesi2013condensin | GRO-seq | circularization | experimental | False | 1 | 2 |
| SRR639133 | 1388 | Kruesi2013condensin | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR639134 | 1389 | Kruesi2013condensin | GRO-seq | circularization | experimental | False | 2 | 2 |
| SRR639142 | 1390 | Kruesi2013condensin | GRO-cap | ligation | experimental | False | 4 | 1 |
| SRR639143 | 1391 | Kruesi2013condensin | GRO-cap | ligation | control | True | 4 | 1 |
| SRR639144 | 1392 | Kruesi2013condensin | GRO-cap | ligation | experimental | False | 4 | 1 |
| SRR639145 | 1393 | Kruesi2013condensin | GRO-cap | ligation | experimental | False | 4 | 1 |
| SRR639146 | 1394 | Kruesi2013condensin | GRO-cap | ligation | experimental | False | 5 | 1 |
| SRR639147 | 1395 | Kruesi2013condensin | GRO-cap | ligation | control | True | 4 | 1 |
| SRR639148 | 1396 | Kruesi2013condensin | GRO-cap | ligation | experimental | False | 4 | 1 |
| SRR639149 | 1397 | Kruesi2013condensin | GRO-cap | ligation | control | True | 4 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR639125 | C. elegans | organism | whole worm | stage embryo | N2 | ||
| SRR639126 | C. elegans | organism | whole worm | stage embryo | N2 | ||
| SRR639127 | C. elegans | organism | whole worm | stage embryo | N2 | RNAi L4440 control | |
| SRR639128 | C. elegans | organism | whole worm | stage embryo | N2 | RNAi L4440 control | |
| SRR639129 | C. elegans | organism | whole worm | stage embryo | sdc-2 (y93) | sdc-2 mut | RNAi sdc-2 |
| SRR639130 | C. elegans | organism | whole worm | stage embryo | sdc-2 (y93) | sdc-2 mut | RNAi sdc-2 |
| SRR639131 | C. elegans | organism | whole worm | stage L1 | N2 | ||
| SRR639132 | C. elegans | organism | whole worm | stage L1 | N2 | ||
| SRR639133 | C. elegans | organism | whole worm | stage L3 | N2 | ||
| SRR639134 | C. elegans | organism | whole worm | stage L3 | N2 | ||
| SRR639142 | C. elegans | organism | whole worm | stage embryo | N2 | ||
| SRR639143 | C. elegans | organism | whole worm | stage embryo | N2 | ||
| SRR639144 | C. elegans | organism | whole worm | stage embryo | sdc-2 (y93) | RNAi sdc-2 | |
| SRR639145 | C. elegans | organism | whole worm | stage embryo | sdc-2 (y93) | RNAi sdc-2 | |
| SRR639146 | C. elegans | organism | whole worm | stage L1 | N2 | ||
| SRR639147 | C. elegans | organism | whole worm | stage L1 | N2 | ||
| SRR639148 | C. elegans | organism | whole worm | stage L3 | N2 | ||
| SRR639149 | C. elegans | organism | whole worm | stage L3 | N2 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR639125 | no treatment | None | None | None | |
| SRR639126 | no treatment | None | None | None | |
| SRR639127 | no treatment | None | None | None | |
| SRR639128 | no treatment | None | None | None | |
| SRR639129 | no treatment | None | None | None | |
| SRR639130 | no treatment | None | None | None | |
| SRR639131 | treatment | starvation | -1 day | 0 day | 1 day |
| SRR639132 | treatment | starvation | -1 day | 0 day | 1 day |
| SRR639133 | no treatment | None | None | None | |
| SRR639134 | no treatment | None | None | None | |
| SRR639142 | no treatment | None | None | None | |
| SRR639143 | no treatment | None | None | None | |
| SRR639144 | no treatment | None | None | None | |
| SRR639145 | no treatment | None | None | None | |
| SRR639146 | no treatment | None | None | None | |
| SRR639147 | no treatment | None | None | None | |
| SRR639148 | no treatment | None | None | None | |
| SRR639149 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR639125 | 30 | 5,593,061 | 0.25056 | 0.8608 | 1.2446 | 0.64045 | 4 | 1 |
| SRR639126 | 30 | 32,775,285 | 0.42188 | 0.8334 | 1.54666 | 0.73809 | 1 | 1 |
| SRR639127 | 30 | 36,960,099 | 0.4504 | 0.8665 | 1.23794 | 0.73571 | 1 | 1 |
| SRR639128 | 30 | 39,563,745 | 0.4715 | 0.8739 | 1.12403 | 0.72772 | 1 | 1 |
| SRR639129 | 30 | 38,035,665 | 0.53163 | 0.8733 | 1.339 | 0.65739 | 2 | 1 |
| SRR639130 | 30 | 28,110,860 | 0.47758 | 0.8699 | 1.32695 | 0.66029 | 1 | 1 |
| SRR639131 | 30 | 11,078,595 | 0.35184 | 0.8462 | 1.28281 | 0.62933 | 3 | 1 |
| SRR639132 | 30 | 30,647,989 | 0.45553 | 0.8396 | 1.2388 | 0.68808 | 1 | 1 |
| SRR639133 | 30 | 31,956,237 | 0.5308 | 0.8695 | 1.86379 | 0.57433 | 2 | 1 |
| SRR639134 | 30 | 48,070,446 | 0.57127 | 0.8674 | 1.60852 | 0.592 | 2 | 1 |
| SRR639142 | 30 | 59,492,868 | 0.91739 | 0.9327 | 2.25976 | 0.26667 | 4 | 1 |
| SRR639143 | 30 | 20,179,419 | 0.84808 | 0.9288 | 2.01873 | 0.24722 | 4 | 1 |
| SRR639144 | 30 | 49,061,141 | 0.93934 | 0.9482 | 2.26065 | 0.20583 | 4 | 1 |
| SRR639145 | 30 | 18,193,005 | 0.89512 | 0.9474 | 2.20662 | 0.16524 | 4 | 1 |
| SRR639146 | 30 | 60,101,488 | 0.96801 | 0.9031 | 2.12354 | 0.12232 | 5 | 1 |
| SRR639147 | 30 | 15,338,624 | 0.94757 | 0.8393 | 2.50462 | 0.07311 | 4 | 1 |
| SRR639148 | 30 | 55,699,708 | 0.8762 | 0.8856 | 2.35463 | 0.29588 | 4 | 1 |
| SRR639149 | 30 | 21,583,316 | 0.8802 | 0.9472 | 2.25964 | 0.21115 | 4 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR639125 | None | None | None | None | None | None | None | None |
| SRR639126 | None | None | None | None | None | None | None | None |
| SRR639127 | None | None | None | None | None | None | None | None |
| SRR639128 | None | None | None | None | None | None | None | None |
| SRR639129 | None | None | None | None | None | None | None | None |
| SRR639130 | None | None | None | None | None | None | None | None |
| SRR639131 | None | None | None | None | None | None | None | None |
| SRR639132 | None | None | None | None | None | None | None | None |
| SRR639133 | None | None | None | None | None | None | None | None |
| SRR639134 | None | None | None | None | None | None | None | None |
| SRR639142 | None | None | None | None | None | None | None | None |
| SRR639143 | None | None | None | None | None | None | None | None |
| SRR639144 | None | None | None | None | None | None | None | None |
| SRR639145 | None | None | None | None | None | None | None | None |
| SRR639146 | None | None | None | None | None | None | None | None |
| SRR639147 | None | None | None | None | None | None | None | None |
| SRR639148 | None | None | None | None | None | None | None | None |
| SRR639149 | None | None | None | None | None | None | None | None |
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