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ERR769522,ERR769523,ERR769524,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| ERR769522 | 1416 | Laitem2015cdk9 | GRO-seq | not noted in GEO or publication | experimental | False | 4 | 1 |
| ERR769523 | 1417 | Laitem2015cdk9 | GRO-seq | not noted in GEO or publication | experimental | False | 4 | 1 |
| ERR769524 | 1418 | Laitem2015cdk9 | GRO-seq | not noted in GEO or publication | control | True | 2 | 1 |
| ERR769525 | 1419 | Laitem2015cdk9 | GRO-seq | not noted in GEO or publication | control | True | 2 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| ERR769522 | H. sapiens | cell line | HeLa | ||||
| ERR769523 | H. sapiens | cell line | HeLa | ||||
| ERR769524 | H. sapiens | cell line | HeLa | ||||
| ERR769525 | H. sapiens | cell line | HeLa |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| ERR769522 | treatment | DRB (100 microM) | -30 min | 0 min | 30 min |
| ERR769523 | treatment | KM05283 (100 microM) | -30 min | 0 min | 30 min |
| ERR769524 | no treatment | None | None | None | |
| ERR769525 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| ERR769522 | 51 | 20,424,927 | 0.82176 | 0.8956 | 3.09371 | 0.17269 | 4 | 2 |
| ERR769523 | 51 | 22,740,522 | 0.81626 | 0.8806 | 2.60208 | 0.19429 | 4 | 1 |
| ERR769524 | 51 | 24,307,216 | 0.49587 | 0.8616 | 2.26562 | 0.44827 | 2 | 1 |
| ERR769525 | 51 | 26,436,727 | 0.43613 | 0.6254 | 2.33991 | 0.48284 | 2 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| ERR769522 | 6914 | 3052 | 2868 | 700 | 8607 | 5304 | 2797 | 878 |
| ERR769523 | 6785 | 3104 | 2889 | 624 | 8731 | 5332 | 2933 | 888 |
| ERR769524 | 22753 | 8283 | 10097 | 3884 | 15007 | 6698 | 5628 | 2740 |
| ERR769525 | 21011 | 8268 | 9005 | 3293 | 13462 | 6519 | 4736 | 2302 |
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