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SRR073010,SRZ073008,SRZ073011,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR073010 | 1425 | Larschan2011x | GRO-seq | ligation | control | True | 4 | 2 |
| SRZ073008 | 1426 | Larschan2011x | GRO-seq | ligation | control | True | 3 | 1 |
| SRZ073011 | 1427 | Larschan2011x | GRO-seq | ligation | control | False | 3 | 1 |
| SRZ073015 | 1428 | Larschan2011x | GRO-seq | ligation | control | False | 3 | 2 |
| SRZ073017 | 1429 | Larschan2011x | GRO-seq | ligation | experimental | False | 3 | 1 |
| SRZ073021 | 1430 | Larschan2011x | GRO-seq | ligation | experimental | False | 3 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR073010 | D. melanogaster | cell line | S2 | ||||
| SRZ073008 | D. melanogaster | cell line | S2 | ||||
| SRZ073011 | D. melanogaster | cell line | S2 | ||||
| SRZ073015 | D. melanogaster | cell line | S2 | ||||
| SRZ073017 | D. melanogaster | cell line | S2 | ||||
| SRZ073021 | D. melanogaster | cell line | S2 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR073010 | no treatment | None | None | None | |
| SRZ073008 | no treatment | None | None | None | |
| SRZ073011 | treatment | dsRNA EGFP (225 microg/20 million cells) | -6 day | 0 day | 6 day |
| SRZ073015 | treatment | dsRNA EGFP (225 microg/20 million cells) | -6 day | 0 day | 6 day |
| SRZ073017 | treatment | dsRNA Msl2 (225 microg/20 million cells) | -6 day | 0 day | 6 day |
| SRZ073021 | treatment | dsRNA Msl2 (225 microg/20 million cells) | -6 day | 0 day | 6 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR073010 | 36 | 10,623,323 | 0.4748 | 0.4553 | 2.41826 | 0.43799 | 4 | 1 |
| SRZ073008 | 36 | 19,577,099 | 0.5243 | 0.4709 | 2.47704 | 0.46222 | 3 | 1 |
| SRZ073011 | 36 | 81,114,721 | 0.73288 | 0.4047 | 3.48334 | 0.39819 | 3 | 2 |
| SRZ073015 | 36 | 32,585,543 | 0.60213 | 0.2724 | 1.99177 | 0.37866 | 3 | 1 |
| SRZ073017 | 36 | 78,587,127 | 0.73868 | 0.4447 | 3.30203 | 0.39282 | 3 | 2 |
| SRZ073021 | 36 | 34,282,658 | 0.62723 | 0.3253 | 2.2843 | 0.37707 | 3 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR073010 | None | None | None | None | None | None | None | None |
| SRZ073008 | None | None | None | None | None | None | None | None |
| SRZ073011 | None | None | None | None | None | None | None | None |
| SRZ073015 | None | None | None | None | None | None | None | None |
| SRZ073017 | None | None | None | None | None | None | None | None |
| SRZ073021 | None | None | None | None | None | None | None | None |
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