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SRR915731,SRR915732,SRR915733,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR915731 | 1431 | Le2013mapping | GRO-seq | ligation | control | False | 2 | 1 |
| SRR915732 | 1432 | Le2013mapping | GRO-seq | ligation | control | False | 4 | 2 |
| SRR915733 | 1433 | Le2013mapping | GRO-seq | ligation | experimental | False | 3 | 1 |
| SRR915734 | 1434 | Le2013mapping | GRO-seq | ligation | experimental | False | 3 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR915731 | H. sapiens | cell line | MCF7 | clone C4-12 | ER-beta flag (stable) | ||
| SRR915732 | H. sapiens | cell line | MCF7 | clone C4-12 | ER-beta flag (stable) | ||
| SRR915733 | H. sapiens | cell line | MCF7 | clone C4-12 | ER-beta flag (stable) | ||
| SRR915734 | H. sapiens | cell line | MCF7 | clone C4-12 | ER-beta flag (stable) |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR915731 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR915732 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR915733 | treatment | 17-beta-estradiol (10 nM) | -1 hr | 0 hr | 1 hr |
| SRR915734 | treatment | 17-beta-estradiol (10 nM) | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR915731 | 39 | 22,691,334 | 0.60813 | 0.7178 | 2.14416 | 0.47905 | 2 | 1 |
| SRR915732 | 51 | 100,839,921 | 0.9059 | 0.7337 | 2.05071 | 0.38793 | 4 | 1 |
| SRR915733 | 39 | 23,901,008 | 0.69147 | 0.8149 | 2.02377 | 0.42431 | 3 | 1 |
| SRR915734 | 51 | 51,830,478 | 0.78605 | 0.5071 | 2.25794 | 0.39905 | 3 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR915731 | 23158 | 11620 | 8972 | 1867 | 12018 | 7513 | 3277 | 1270 |
| SRR915732 | 16618 | 5028 | 9027 | 1640 | 10808 | 5467 | 4011 | 1325 |
| SRR915733 | 20299 | 10020 | 7843 | 1686 | 11159 | 6892 | 2987 | 1242 |
| SRR915734 | 15044 | 4913 | 7691 | 1453 | 9358 | 5314 | 3245 | 1022 |
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