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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR11785044	1709	Liu2021transcription	PRO-seq	ligation	control	False	1	1
SRR11785045	1710	Liu2021transcription	PRO-seq	ligation	control	False	1	2
SRR11785046	1711	Liu2021transcription	PRO-seq	ligation	experimental	False	1	1
SRR11785047	1712	Liu2021transcription	PRO-seq	ligation	experimental	False	1	2
SRR11785048	1713	Liu2021transcription	PRO-seq	ligation	control	False	1	1
SRR11785049	1714	Liu2021transcription	PRO-seq	ligation	control	False	1	2
SRR11785050	1715	Liu2021transcription	PRO-seq	ligation	experimental	False	1	1
SRR11785051	1716	Liu2021transcription	PRO-seq	ligation	experimental	False	1	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR11785044	H. sapiens	primary cell	CD34+ erythroblast	sgRNA Aavs1
SRR11785045	H. sapiens	primary cell	CD34+ erythroblast	sgRNA Aavs1
SRR11785046	H. sapiens	primary cell	CD34+ erythroblast	sgRNA Bcl11a exon 2		Bcl11a -/-
SRR11785047	H. sapiens	primary cell	CD34+ erythroblast	sgRNA Bcl11a exon 2		Bcl11a -/-
SRR11785048	H. sapiens	primary cell	CD34+ erythroblast	sgRNA Aavs1
SRR11785049	H. sapiens	primary cell	CD34+ erythroblast	sgRNA Aavs1
SRR11785050	H. sapiens	primary cell	CD34+ erythroblast	sgRNA Bcl11a exon 2		Bcl11a -/-
SRR11785051	H. sapiens	primary cell	CD34+ erythroblast	sgRNA Bcl11a exon 2		Bcl11a -/-

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR11785044	no treatment		None	None	None
SRR11785045	no treatment		None	None	None
SRR11785046	no treatment		None	None	None
SRR11785047	no treatment		None	None	None
SRR11785048	no treatment		None	None	None
SRR11785049	no treatment		None	None	None
SRR11785050	no treatment		None	None	None
SRR11785051	no treatment		None	None	None

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR11785044	41	53,884,958	0.28422	0.7951	3.94649	0.74265	1	2
SRR11785045	41	44,149,369	0.3774	0.7655	4.01448	0.69002	1	2
SRR11785046	41	34,332,052	0.38838	0.7282	4.33876	0.64287	1	2
SRR11785047	41	43,538,425	0.32604	0.7863	3.96078	0.71809	1	2
SRR11785048	41	50,673,433	0.38803	0.714	4.61649	0.68079	1	2
SRR11785049	41	50,016,347	0.45185	0.7077	4.5849	0.65669	1	2
SRR11785050	41	50,875,125	0.42236	0.7142	4.67992	0.67248	1	2
SRR11785051	41	47,868,057	0.34881	0.7199	4.56534	0.70534	1	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR11785044	29940	14928	10999	5044	25257	7886	11372	5116
SRR11785045	27210	13785	10176	4120	21473	7865	9145	3877
SRR11785046	24834	13034	9281	3191	18434	7513	7243	2962
SRR11785047	27160	13743	10083	4227	21983	7851	9506	4011
SRR11785048	24297	13521	8614	3001	19800	7634	8105	3349
SRR11785049	23093	13046	8147	2761	18635	7627	7455	3011
SRR11785050	24016	13377	8622	2907	19692	7694	8101	3259
SRR11785051	24282	13480	8681	3056	20059	7767	8335	3384