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SRR5100756,SRR5100757,SRR5100758,...
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. |
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR5100756 | 1837 | Meyerswallen2017xx | ChRO-seq | ligation | control | True | 3 | 1 |
| SRR5100757 | 1838 | Meyerswallen2017xx | ChRO-seq | ligation | experimental | False | 4 | 1 |
| SRR5100758 | 1839 | Meyerswallen2017xx | ChRO-seq | ligation | control | False | 3 | 1 |
| SRR5100759 | 1840 | Meyerswallen2017xx | ChRO-seq | ligation | control | False | 3 | 2 |
| SRR5100760 | 1841 | Meyerswallen2017xx | ChRO-seq | ligation | control | False | 2 | 1 |
| SRR5100761 | 1842 | Meyerswallen2017xx | ChRO-seq | ligation | experimental | False | 3 | 1 |
| SRR5100762 | 1843 | Meyerswallen2017xx | ChRO-seq | ligation | experimental | False | 4 | 2 |
| SRR5100763 | 1844 | Meyerswallen2017xx | ChRO-seq | ligation | experimental | False | 4 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR5100756 | C. lupus familiaris | tissue | embryonic gonad | individual A1114 | XX | ||
| SRR5100757 | C. lupus familiaris | tissue | embryonic gonad | individual C3556 | XX; XX DSD insertion +/+ | ||
| SRR5100758 | C. lupus familiaris | tissue | embryonic gonad | individual C3557 | XY; XX DSD insertion +/+ | ||
| SRR5100759 | C. lupus familiaris | tissue | embryonic gonad | individual C3639 | XY; XX DSD insertion +/+ | ||
| SRR5100760 | C. lupus familiaris | tissue | embryonic gonad | individual C3640 | XY; XX DSD insertion +/- | ||
| SRR5100761 | C. lupus familiaris | tissue | embryonic gonad | individual C3641 | XX; XX DSD insertion +/- | ||
| SRR5100762 | C. lupus familiaris | tissue | embryonic gonad | individual C3681 | XX; XX DSD insertion +/+ | ||
| SRR5100763 | C. lupus familiaris | tissue | embryonic gonad | individual C3682 | XX; XX DSD insertion +/- |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR5100756 | no treatment | None | None | None | |
| SRR5100757 | no treatment | None | None | None | |
| SRR5100758 | no treatment | None | None | None | |
| SRR5100759 | no treatment | None | None | None | |
| SRR5100760 | no treatment | None | None | None | |
| SRR5100761 | no treatment | None | None | None | |
| SRR5100762 | no treatment | None | None | None | |
| SRR5100763 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR5100756 | 76 | 29,791,653 | 0.77665 | 0.6041 | 6.4367 | 0.31961 | 3 | 3 |
| SRR5100757 | 76 | 33,137,653 | 0.8174 | 0.6075 | 6.86865 | 0.28893 | 4 | 3 |
| SRR5100758 | 76 | 29,504,027 | 0.73651 | 0.5746 | 6.11423 | 0.34292 | 3 | 3 |
| SRR5100759 | 76 | 29,530,210 | 0.68409 | 0.6201 | 5.74924 | 0.41956 | 3 | 3 |
| SRR5100760 | 76 | 27,751,417 | 0.55184 | 0.5972 | 5.28248 | 0.51881 | 2 | 3 |
| SRR5100761 | 76 | 30,603,095 | 0.7457 | 0.6325 | 5.76612 | 0.37554 | 3 | 3 |
| SRR5100762 | 76 | 28,025,282 | 0.86554 | 0.6003 | 6.47514 | 0.21229 | 4 | 3 |
| SRR5100763 | 76 | 33,556,555 | 0.80947 | 0.6146 | 7.12759 | 0.31007 | 4 | 4 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR5100756 | None | None | None | None | None | None | None | None |
| SRR5100757 | None | None | None | None | None | None | None | None |
| SRR5100758 | None | None | None | None | None | None | None | None |
| SRR5100759 | None | None | None | None | None | None | None | None |
| SRR5100760 | None | None | None | None | None | None | None | None |
| SRR5100761 | None | None | None | None | None | None | None | None |
| SRR5100762 | None | None | None | None | None | None | None | None |
| SRR5100763 | None | None | None | None | None | None | None | None |
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