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SRR1823901,SRR1823902,SRR1823903,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | QC score | Replicate | Outlier? |
| SRR1823901 | 1943 | Niskanen2015global | GRO-seq | circularization | control | 1 | 1 | No |
| SRR1823902 | 1944 | Niskanen2015global | GRO-seq | circularization | control | 2 | 2 | No |
| SRR1823903 | 1945 | Niskanen2015global | GRO-seq | circularization | experimental | 2 | 1 | No |
| SRR1823904 | 1946 | Niskanen2015global | GRO-seq | circularization | experimental | 2 | 2 | No |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1823901 | H. sapiens | cell line | K562 | ||||
| SRR1823902 | H. sapiens | cell line | K562 | ||||
| SRR1823903 | H. sapiens | cell line | K562 | ||||
| SRR1823904 | H. sapiens | cell line | K562 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1823901 | no treatment | None | None | None | |
| SRR1823902 | no treatment | None | None | None | |
| SRR1823903 | treatment | heat shock (43 Celsius) | -30 min | 0 min | 30 min |
| SRR1823904 | treatment | heat shock (43 Celsius) | -30 min | 0 min | 30 min |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1823901 | 51 | 21,680,977 | 0.39115 | 0.901 | 3.08511 | 0.63219 | 1 | 2 |
| SRR1823902 | 51 | 19,643,731 | 0.35234 | 0.9495 | 2.70226 | 0.67235 | 2 | 1 |
| SRR1823903 | 51 | 18,223,617 | 0.32308 | 0.9198 | 2.87966 | 0.69795 | 2 | 1 |
| SRR1823904 | 51 | 16,819,631 | 0.33745 | 0.947 | 2.92806 | 0.68579 | 2 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1823901 | 15147 | 6965 | 5906 | 1922 | 11160 | 5234 | 3821 | 1969 |
| SRR1823902 | 16262 | 7881 | 6073 | 2107 | 11704 | 5479 | 3901 | 2067 |
| SRR1823903 | 23292 | 8711 | 9559 | 4385 | 16698 | 6177 | 6462 | 3858 |
| SRR1823904 | 21973 | 7645 | 9176 | 4412 | 15920 | 5633 | 6163 | 3775 |
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