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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5253457	1948	Niskanen2018endothelial	GRO-seq	circularization	control	True	4	1
SRR5253460	1949	Niskanen2018endothelial	GRO-seq	circularization	control	True	2	2
SRR5253461	1950	Niskanen2018endothelial	GRO-seq	circularization	control	True	2	3
SRR5253462	1951	Niskanen2018endothelial	GRO-seq	circularization	control	True	2	4
SRR5253465	1952	Niskanen2018endothelial	GRO-seq	circularization	experimental	False	4	1
SRR5253468	1953	Niskanen2018endothelial	GRO-seq	circularization	experimental	False	2	2
SRR5253469	1954	Niskanen2018endothelial	GRO-seq	circularization	experimental	False	2	3
SRR5253470	1955	Niskanen2018endothelial	GRO-seq	circularization	experimental	False	3	4

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5253457	H. sapiens	primary cell	HUVEC
SRR5253460	H. sapiens	primary cell	HUVEC
SRR5253461	H. sapiens	primary cell	HUVEC
SRR5253462	H. sapiens	primary cell	HUVEC
SRR5253465	H. sapiens	primary cell	HUVEC
SRR5253468	H. sapiens	primary cell	HUVEC
SRR5253469	H. sapiens	primary cell	HUVEC
SRR5253470	H. sapiens	primary cell	HUVEC

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5253457	no treatment		None	None	None
SRR5253460	no treatment		None	None	None
SRR5253461	no treatment		None	None	None
SRR5253462	no treatment		None	None	None
SRR5253465	treatment	hypoxia (1% O2, 5% CO2)	-8 hr	0 hr	8 hr
SRR5253468	treatment	hypoxia (1% O2, 5% CO2)	-8 hr	0 hr	8 hr
SRR5253469	treatment	hypoxia (1% O2, 5% CO2)	-8 hr	0 hr	8 hr
SRR5253470	treatment	hypoxia (1% O2, 5% CO2)	-8 hr	0 hr	8 hr

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5253457	51	5,663,925	0.52153	0.9077	3.07742	0.39791	4	2
SRR5253460	51	15,337,452	0.57085	0.9449	3.20408	0.45335	2	2
SRR5253461	51	18,940,314	0.26905	0.9377	2.14785	0.77527	2	1
SRR5253462	51	15,014,124	0.30982	0.931	1.65025	0.72443	2	1
SRR5253465	50	6,161,964	0.70098	0.9295	2.96894	0.22049	4	1
SRR5253468	51	15,287,017	0.55914	0.9388	3.03883	0.47261	2	2
SRR5253469	51	16,581,884	0.41972	0.9216	2.65666	0.61504	2	1
SRR5253470	51	13,235,585	0.37745	0.9116	2.40781	0.64541	3	1

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5253457	7524	3206	3062	1110	4454	2954	1127	540
SRR5253460	19995	6837	8665	4323	12883	6240	4383	2517
SRR5253461	31471	11303	13082	7291	23399	8389	9785	5198
SRR5253462	27563	8299	12244	6630	17293	6688	6760	4045
SRR5253465	3911	1532	1542	584	2929	2048	700	371
SRR5253468	16420	6118	6973	3266	13754	7343	4709	2230
SRR5253469	29191	11702	11925	6101	23061	9881	9431	4356
SRR5253470	26130	8682	11257	6353	20732	8986	8200	4276