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SRR5944047,SRR5944048,SRZ5944049,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR5944047 | 2107 | Rahnamoun2017mutant | GRO-seq | ligation | control | True | 1 | 1 |
| SRR5944048 | 2108 | Rahnamoun2017mutant | GRO-seq | ligation | control | True | 2 | 2 |
| SRZ5944049 | 2109 | Rahnamoun2017mutant | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRZ5944050 | 2110 | Rahnamoun2017mutant | GRO-seq | ligation | experimental | False | 1 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR5944047 | H. sapiens | cell line | SW480 | ||||
| SRR5944048 | H. sapiens | cell line | SW480 | ||||
| SRZ5944049 | H. sapiens | cell line | SW480 | ||||
| SRZ5944050 | H. sapiens | cell line | SW480 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR5944047 | no treatment | None | None | None | |
| SRR5944048 | no treatment | None | None | None | |
| SRZ5944049 | treatment | TNF-alpha (12.5 ng/mL) | -16 hr | 0 hr | 16 hr |
| SRZ5944050 | treatment | TNF-alpha (12.5 ng/mL) | -16 hr | 0 hr | 16 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR5944047 | 50 | 24,177,244 | 0.41269 | 0.8105 | 3.11774 | 0.60857 | 1 | 2 |
| SRR5944048 | 50 | 17,613,939 | 0.41205 | 0.8331 | 3.04867 | 0.59811 | 2 | 2 |
| SRZ5944049 | 50 | 25,950,895 | 0.4009 | 0.8297 | 2.91069 | 0.62286 | 1 | 1 |
| SRZ5944050 | 50 | 29,680,667 | 0.40035 | 0.8411 | 2.79353 | 0.62951 | 1 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR5944047 | 31352 | 11841 | 12653 | 5748 | 18538 | 7963 | 6539 | 3881 |
| SRR5944048 | 25370 | 10361 | 10288 | 4205 | 14357 | 6982 | 4713 | 2732 |
| SRZ5944049 | 32770 | 11993 | 13157 | 6346 | 20021 | 8074 | 7305 | 4366 |
| SRZ5944050 | 32857 | 12421 | 13358 | 6402 | 20920 | 8302 | 7852 | 4725 |
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