DBNascent | Samples

SRR1991266,SRR1991267,SRR1991268

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR1991266	2299	Sigova2015transcription	GRO-seq	circularization	control	True	2	1
SRR1991267	2300	Sigova2015transcription	GRO-seq	circularization	control	False	4	1
SRR1991268	2301	Sigova2015transcription	GRO-seq	circularization	experimental	False	5	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR1991266	M. musculus	cell line	ESC
SRR1991267	M. musculus	cell line	ESC			BirA knock-in
SRR1991268	M. musculus	cell line	ESC			BirA knock-in

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR1991266	no treatment		None	None	None
SRR1991267	vehicle	DMSO	-6 hr	0 hr	6 hr
SRR1991268	treatment	actinomycin D (1 microM)	-6 hr	0 hr	6 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR1991266	51	46,843,266	0.50436	0.4012	2.62025	0.56852	2	1
SRR1991267	40	16,918,036	0.85788	0.4024	0.99608	0.12429	4	1
SRR1991268	40	6,424,786	0.9298	0.4523	0.24545	0.03615	5	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR1991266	33345	11056	9612	8515	20875	7669	5255	5956
SRR1991267	469	181	189	85	498	126	120	232
SRR1991268	52	36	31	6	136	23	46	70