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SRR3313817,SRR3313818,SRR3313819,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR3313817 | 2409 | Sun2017enhancer | GRO-seq | not noted in GEO or publication | control | True | 1 | 1 |
| SRR3313818 | 2410 | Sun2017enhancer | GRO-seq | not noted in GEO or publication | experimental | False | 2 | 1 |
| SRR3313819 | 2411 | Sun2017enhancer | GRO-seq | not noted in GEO or publication | experimental | False | 1 | 1 |
| SRR3313820 | 2412 | Sun2017enhancer | GRO-seq | not noted in GEO or publication | experimental | False | 1 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR3313817 | M. musculus | tissue | quadriceps muscle | C57BL/6 | |||
| SRR3313818 | M. musculus | tissue | quadriceps muscle | C57BL/6 | Hdac3 -/- | ||
| SRR3313819 | M. musculus | tissue | quadriceps muscle | C57BL/6 | |||
| SRR3313820 | M. musculus | tissue | quadriceps muscle | C57BL/6 | Hdac3 -/- |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR3313817 | no treatment | None | None | None | |
| SRR3313818 | no treatment | None | None | None | |
| SRR3313819 | treatment | treadmill exercise (10 m/min) | -3 hr | -2 hr | 1 hr |
| treatment | treadmill exercise (10 m/min) | -5 hr | -4 hr | 1 hr | |
| treatment | treadmill exercise (10 m/min) | -7 hr | -6 hr | 1 hr | |
| SRR3313820 | treatment | treadmill exercise (10 m/min) | -3 hr | -2 hr | 1 hr |
| treatment | treadmill exercise (10 m/min) | -5 hr | -4 hr | 1 hr | |
| treatment | treadmill exercise (10 m/min) | -7 hr | -6 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR3313817 | 50 | 131,772,372 | 0.49634 | 0.5448 | 3.69195 | 0.65149 | 1 | 2 |
| SRR3313818 | 50 | 139,980,033 | 0.51889 | 0.6052 | 3.65311 | 0.69345 | 2 | 2 |
| SRR3313819 | 50 | 130,916,929 | 0.49991 | 0.581 | 3.78074 | 0.67064 | 1 | 2 |
| SRR3313820 | 50 | 123,718,715 | 0.48479 | 0.5665 | 5.38197 | 0.67754 | 1 | 3 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR3313817 | 38603 | 14066 | 11676 | 10553 | 43760 | 9819 | 18974 | 12065 |
| SRR3313818 | 37792 | 13905 | 11203 | 10415 | 44744 | 9931 | 19726 | 12435 |
| SRR3313819 | 38533 | 13643 | 12207 | 10643 | 45001 | 9682 | 20129 | 12334 |
| SRR3313820 | 59179 | 13187 | 18808 | 23490 | 46424 | 10062 | 20507 | 13316 |
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