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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR10737798	2446	Tena2020induction	GRO-seq	ligation	experimental	False	2	1
SRR10737799	2447	Tena2020induction	GRO-seq	ligation	experimental	False	1	2
SRR10737800	2448	Tena2020induction	GRO-seq	ligation	experimental	False	2	3
SRR10737801	2449	Tena2020induction	GRO-seq	ligation	experimental	False	1	1
SRR10737802	2450	Tena2020induction	GRO-seq	ligation	experimental	False	1	2
SRR10737803	2451	Tena2020induction	GRO-seq	ligation	experimental	False	1	3
SRR10737804	2452	Tena2020induction	GRO-seq	ligation	experimental	False	1	1
SRR10737805	2453	Tena2020induction	GRO-seq	ligation	experimental	False	1	2
SRR10737806	2454	Tena2020induction	GRO-seq	ligation	experimental	False	1	3
SRR10737807	2455	Tena2020induction	GRO-seq	ligation	experimental	False	1	1
SRR10737808	2456	Tena2020induction	GRO-seq	ligation	experimental	False	1	2
SRR10737809	2457	Tena2020induction	GRO-seq	ligation	experimental	False	1	3

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR10737798	M. musculus	primary cell	ESC	line 1		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
SRR10737799	M. musculus	primary cell	ESC	line 1		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
SRR10737800	M. musculus	primary cell	ESC	line 1		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
SRR10737801	M. musculus	primary cell	NSPC	line 1		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
SRR10737802	M. musculus	primary cell	NSPC	line 1		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
SRR10737803	M. musculus	primary cell	NSPC	line 1		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
SRR10737804	M. musculus	primary cell	ESC	line 2		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
SRR10737805	M. musculus	primary cell	ESC	line 2		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
SRR10737806	M. musculus	primary cell	ESC	line 2		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
SRR10737807	M. musculus	primary cell	NSPC	line 2		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
SRR10737808	M. musculus	primary cell	NSPC	line 2		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters
SRR10737809	M. musculus	primary cell	NSPC	line 2		Xrcc4 -/-; p53 -/-; recurrent genomic break clusters

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR10737798	no treatment		None	None	None
SRR10737799	no treatment		None	None	None
SRR10737800	no treatment		None	None	None
SRR10737801	no treatment		None	None	None
SRR10737802	no treatment		None	None	None
SRR10737803	no treatment		None	None	None
SRR10737804	no treatment		None	None	None
SRR10737805	no treatment		None	None	None
SRR10737806	no treatment		None	None	None
SRR10737807	no treatment		None	None	None
SRR10737808	no treatment		None	None	None
SRR10737809	no treatment		None	None	None

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR10737798	50	48,876,504	0.50455	0.7956	2.18502	0.67151	2	1
SRR10737799	50	47,249,181	0.48602	0.7785	2.81813	0.67453	1	1
SRR10737800	50	48,925,816	0.50239	0.8019	2.1693	0.67533	2	1
SRR10737801	50	48,701,328	0.28753	0.8988	2.2167	0.86759	1	1
SRR10737802	50	49,060,740	0.30936	0.8945	2.22442	0.8543	1	1
SRR10737803	50	48,587,997	0.37673	0.8804	2.19828	0.81995	1	1
SRR10737804	51	46,881,823	0.39584	0.8363	2.68675	0.76443	1	1
SRR10737805	51	46,381,059	0.4404	0.8266	2.60089	0.73805	1	1
SRR10737806	51	46,071,582	0.40119	0.8361	2.57206	0.76143	1	1
SRR10737807	51	47,141,251	0.41794	0.8765	2.18269	0.80185	1	1
SRR10737808	51	45,989,685	0.33774	0.8707	2.16541	0.83035	1	1
SRR10737809	51	44,595,626	0.36314	0.8709	2.1482	0.81505	1	1

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR10737798	51201	8999	18043	17975	34287	5885	11201	14009
SRR10737799	48903	9905	17290	15263	32344	6122	10622	11650
SRR10737800	51305	9146	18106	18088	34503	5908	11224	14225
SRR10737801	33908	10496	12265	6008	26795	6450	9461	7243
SRR10737802	33511	10520	12078	5738	25890	6412	8996	6844
SRR10737803	36909	11075	13325	7095	26142	6363	9698	6571
SRR10737804	58981	9555	21699	21081	42650	6182	14051	18573
SRR10737805	55868	9462	20869	19356	39989	6101	13091	17026
SRR10737806	59302	9765	21916	21256	42630	6272	14117	18394
SRR10737807	28019	7343	11890	5004	24142	6062	8546	6137
SRR10737808	28420	7609	11586	5560	25589	6240	9150	6983
SRR10737809	29021	7741	11901	5547	24835	6291	8789	6421