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SRR1652068,SRR1652069,SRR1652070,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | QC score | Replicate | Outlier? |
| SRR1652068 | 2602 | Wang2015lsd1n | GRO-seq | ligation | control | 4 | 1 | No |
| SRR1652069 | 2603 | Wang2015lsd1n | GRO-seq | ligation | experimental | 4 | 1 | No |
| SRR1652070 | 2604 | Wang2015lsd1n | GRO-seq | ligation | experimental | 3 | 1 | No |
| SRR1652071 | 2605 | Wang2015lsd1n | GRO-seq | ligation | experimental | 3 | 1 | No |
| SRR1652072 | 2606 | Wang2015lsd1n | GRO-seq | ligation | experimental | 3 | 1 | No |
| SRR1652073 | 2607 | Wang2015lsd1n | GRO-seq | ligation | experimental | 3 | 1 | No |
| SRR1652074 | 2608 | Wang2015lsd1n | GRO-seq | ligation | control | 3 | 1 | No |
| SRR1652075 | 2609 | Wang2015lsd1n | GRO-seq | ligation | experimental | 2 | 1 | No |
| SRR1652076 | 2610 | Wang2015lsd1n | GRO-seq | ligation | experimental | 2 | 1 | No |
| SRR1652077 | 2611 | Wang2015lsd1n | GRO-seq | ligation | experimental | 2 | 1 | No |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1652068 | M. musculus | primary cell | cortical neuron | Lsd1 exon 8a fl/fl | |||
| SRR1652069 | M. musculus | primary cell | cortical neuron | Lsd1 exon 8a fl/fl | |||
| SRR1652070 | M. musculus | primary cell | cortical neuron | Lsd1 exon 8a fl/fl | |||
| SRR1652071 | M. musculus | primary cell | cortical neuron | Lsd1 exon 8a fl/fl; Nestin-Cre | |||
| SRR1652072 | M. musculus | primary cell | cortical neuron | Lsd1 exon 8a fl/fl; Nestin-Cre | |||
| SRR1652073 | M. musculus | primary cell | cortical neuron | Lsd1 exon 8a fl/fl; Nestin-Cre | |||
| SRR1652074 | M. musculus | primary cell | cortical neuron | Lsd1 exon 8a fl/fl | |||
| SRR1652075 | M. musculus | primary cell | cortical neuron | Lsd1 exon 8a fl/fl | |||
| SRR1652076 | M. musculus | primary cell | cortical neuron | Lsd1 exon 8a fl/fl; Nestin-Cre | |||
| SRR1652077 | M. musculus | primary cell | cortical neuron | Lsd1 exon 8a fl/fl; Nestin-Cre |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1652068 | treatment | tetrodotoxin (1 microM) | -14 hr | 0 hr | 14 hr |
| SRR1652069 | treatment | KCl (55 mM) | -1 hr | 0 hr | 1 hr |
| treatment | tetrodotoxin (1 microM) | -15 hr | -1 hr | 14 hr | |
| SRR1652070 | treatment | KCl (55 mM) | -3 hr | 0 hr | 3 hr |
| treatment | tetrodotoxin (1 microM) | -17 hr | -3 hr | 14 hr | |
| SRR1652071 | treatment | tetrodotoxin (1 microM) | -14 hr | 0 hr | 14 hr |
| SRR1652072 | treatment | KCl (55 mM) | -1 hr | 0 hr | 1 hr |
| treatment | tetrodotoxin (1 microM) | -15 hr | -1 hr | 14 hr | |
| SRR1652073 | treatment | KCl (55 mM) | -3 hr | 0 hr | 3 hr |
| treatment | tetrodotoxin (1 microM) | -17 hr | -3 hr | 14 hr | |
| SRR1652074 | treatment | tetrodotoxin (1 microM) | -14 hr | 0 hr | 14 hr |
| SRR1652075 | treatment | KCl (55 mM) | -1 hr | 0 hr | 1 hr |
| treatment | tetrodotoxin (1 microM) | -15 hr | -1 hr | 14 hr | |
| SRR1652076 | treatment | tetrodotoxin (1 microM) | -14 hr | 0 hr | 14 hr |
| SRR1652077 | treatment | KCl (55 mM) | -1 hr | 0 hr | 1 hr |
| treatment | tetrodotoxin (1 microM) | -15 hr | -1 hr | 14 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1652068 | 50 | 23,087,560 | 0.81477 | 0.7238 | 3.47203 | 0.19187 | 4 | 2 |
| SRR1652069 | 50 | 25,299,383 | 0.83886 | 0.7096 | 3.85993 | 0.17109 | 4 | 2 |
| SRR1652070 | 50 | 25,493,530 | 0.67483 | 0.761 | 5.19433 | 0.34769 | 3 | 3 |
| SRR1652071 | 50 | 26,509,479 | 0.73816 | 0.7195 | 4.37991 | 0.27446 | 3 | 2 |
| SRR1652072 | 50 | 35,005,948 | 0.74399 | 0.6956 | 4.30246 | 0.27364 | 3 | 2 |
| SRR1652073 | 50 | 31,668,765 | 0.7246 | 0.6854 | 4.55949 | 0.29505 | 3 | 2 |
| SRR1652074 | 50 | 37,589,359 | 0.67487 | 0.7407 | 2.57558 | 0.40793 | 3 | 1 |
| SRR1652075 | 50 | 36,884,621 | 0.56438 | 0.7633 | 2.58869 | 0.49746 | 2 | 1 |
| SRR1652076 | 50 | 32,903,643 | 0.57039 | 0.7525 | 2.43915 | 0.49401 | 2 | 1 |
| SRR1652077 | 50 | 33,307,750 | 0.6382 | 0.7421 | 2.71757 | 0.43729 | 2 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1652068 | 3256 | 981 | 914 | 41 | 1744 | 618 | 491 | 398 |
| SRR1652069 | 3936 | 1151 | 1126 | 51 | 2031 | 806 | 527 | 384 |
| SRR1652070 | 5401 | 1588 | 1788 | 124 | 3530 | 1329 | 1007 | 684 |
| SRR1652071 | 5874 | 1963 | 1703 | 126 | 3397 | 1527 | 812 | 574 |
| SRR1652072 | 6644 | 2387 | 1942 | 146 | 4424 | 2042 | 1113 | 713 |
| SRR1652073 | 5706 | 1824 | 1781 | 80 | 3857 | 1562 | 1015 | 748 |
| SRR1652074 | 13293 | 6954 | 3742 | 863 | 10443 | 5736 | 2330 | 1181 |
| SRR1652075 | 12891 | 5940 | 4393 | 1076 | 11493 | 5391 | 3451 | 1626 |
| SRR1652076 | 14432 | 7234 | 4403 | 1111 | 11167 | 5669 | 2852 | 1419 |
| SRR1652077 | 14036 | 6114 | 5157 | 1142 | 11992 | 5758 | 3711 | 1498 |
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