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SRR6808881,SRR6808882,SRR6808883,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR6808881 | 2627 | Wang2018nascent | PRO-seq | ligation | control | False | 1 | 1 |
| SRR6808882 | 2628 | Wang2018nascent | PRO-seq | ligation | control | False | 1 | 2 |
| SRR6808883 | 2629 | Wang2018nascent | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRR6808884 | 2630 | Wang2018nascent | PRO-seq | ligation | experimental | False | 1 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR6808881 | M. musculus | tissue | liver | HDAC3 +/+; Alb-Cre | |||
| SRR6808882 | M. musculus | tissue | liver | HDAC3 +/+; Alb-Cre | |||
| SRR6808883 | M. musculus | tissue | liver | HDAC3 fl/-; Alb-Cre | |||
| SRR6808884 | M. musculus | tissue | liver | HDAC3 fl/-; Alb-Cre |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR6808881 | no treatment | None | None | None | |
| SRR6808882 | no treatment | None | None | None | |
| SRR6808883 | no treatment | None | None | None | |
| SRR6808884 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR6808881 | 51 | 41,744,961 | 0.39529 | 0.6748 | 3.06853 | 0.72159 | 1 | 2 |
| SRR6808882 | 51 | 52,420,229 | 0.42431 | 0.7237 | 3.38536 | 0.72278 | 1 | 2 |
| SRR6808883 | 51 | 46,981,316 | 0.39402 | 0.6942 | 3.14405 | 0.73462 | 1 | 2 |
| SRR6808884 | 51 | 29,657,412 | 0.35142 | 0.662 | 3.54339 | 0.70954 | 1 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR6808881 | 20521 | 6550 | 7752 | 4176 | 19662 | 7192 | 6965 | 3916 |
| SRR6808882 | 23414 | 7821 | 8561 | 4766 | 22567 | 7186 | 8368 | 4806 |
| SRR6808883 | 24178 | 7668 | 8994 | 5404 | 23631 | 8103 | 8770 | 5100 |
| SRR6808884 | 21516 | 7154 | 8109 | 4251 | 19225 | 7923 | 6504 | 3442 |
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