Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR1297231,SRR1297232,SRR1297233,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1297231 | 2648 | Wei2016rbfox2 | GRO-seq | circularization | control | True | 2 | 1 |
| SRR1297232 | 2649 | Wei2016rbfox2 | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR1297233 | 2650 | Wei2016rbfox2 | GRO-seq | circularization | control | False | 3 | 1 |
| SRR1297234 | 2651 | Wei2016rbfox2 | GRO-seq | circularization | control | False | 3 | 2 |
| SRR1297235 | 2652 | Wei2016rbfox2 | GRO-seq | circularization | experimental | False | 4 | 1 |
| SRR1297236 | 2653 | Wei2016rbfox2 | GRO-seq | circularization | experimental | False | 3 | 2 |
| SRR1297237 | 2654 | Wei2016rbfox2 | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR1297238 | 2655 | Wei2016rbfox2 | GRO-seq | circularization | experimental | False | 3 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1297231 | M. musculus | primary cell | cardiomyocyte | Black Swiss | |||
| SRR1297232 | M. musculus | primary cell | cardiomyocyte | Black Swiss | Rbfox2 -/- | ||
| SRR1297233 | M. musculus | cell line | MEF | siRNA control | |||
| SRR1297234 | M. musculus | cell line | MEF | siRNA control | |||
| SRR1297235 | M. musculus | cell line | MEF | siRNA Rbfox2 | |||
| SRR1297236 | M. musculus | cell line | MEF | siRNA Rbfox2 | |||
| SRR1297237 | M. musculus | cell line | MEF | siRNA Suz12 | |||
| SRR1297238 | M. musculus | cell line | MEF | siRNA Suz12 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1297231 | no treatment | None | None | None | |
| SRR1297232 | no treatment | None | None | None | |
| SRR1297233 | no treatment | None | None | None | |
| SRR1297234 | no treatment | None | None | None | |
| SRR1297235 | no treatment | None | None | None | |
| SRR1297236 | no treatment | None | None | None | |
| SRR1297237 | no treatment | None | None | None | |
| SRR1297238 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1297231 | 40 | 36,407,320 | 0.51123 | 0.8652 | 3.15257 | 0.60053 | 2 | 2 |
| SRR1297232 | 40 | 37,378,102 | 0.57006 | 0.8662 | 3.32707 | 0.57571 | 2 | 2 |
| SRR1297233 | 40 | 14,759,703 | 0.5563 | 0.7395 | 3.25172 | 0.4465 | 3 | 2 |
| SRR1297234 | 40 | 13,603,014 | 0.57938 | 0.7122 | 3.26984 | 0.42024 | 3 | 2 |
| SRR1297235 | 40 | 10,077,408 | 0.47255 | 0.6873 | 3.21017 | 0.51709 | 4 | 2 |
| SRR1297236 | 40 | 11,490,565 | 0.45179 | 0.7062 | 3.36286 | 0.54261 | 3 | 2 |
| SRR1297237 | 40 | 12,242,521 | 0.49579 | 0.7321 | 3.29443 | 0.5006 | 3 | 2 |
| SRR1297238 | 40 | 12,667,280 | 0.48213 | 0.726 | 3.29156 | 0.51505 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1297231 | 11723 | 4399 | 3989 | 2003 | 14892 | 5781 | 4905 | 2980 |
| SRR1297232 | 10229 | 3382 | 3799 | 1607 | 12351 | 4744 | 3934 | 2461 |
| SRR1297233 | 14562 | 6608 | 4732 | 2069 | 11542 | 6277 | 2746 | 1707 |
| SRR1297234 | 13694 | 6378 | 4367 | 1800 | 10844 | 6151 | 2439 | 1436 |
| SRR1297235 | 11870 | 5461 | 3950 | 1500 | 8750 | 5157 | 1846 | 1046 |
| SRR1297236 | 14063 | 6306 | 4740 | 1916 | 10465 | 5783 | 2490 | 1395 |
| SRR1297237 | 12713 | 6001 | 4054 | 1531 | 10241 | 5773 | 2342 | 1268 |
| SRR1297238 | 13661 | 6328 | 4452 | 1669 | 10711 | 6029 | 2521 | 1246 |
Top