DBNascent | Samples

SRR6498830,SRR6498831,SRR6498832,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR6498830	2656	Weissmiller2019inhibition	PRO-seq	ligation	control	False	1	1
SRR6498831	2657	Weissmiller2019inhibition	PRO-seq	ligation	control	False	2	2
SRR6498832	2658	Weissmiller2019inhibition	PRO-seq	ligation	control	False	2	3
SRR6498833	2659	Weissmiller2019inhibition	PRO-seq	ligation	experimental	False	1	1
SRR6498834	2660	Weissmiller2019inhibition	PRO-seq	ligation	experimental	False	2	2
SRR6498835	2661	Weissmiller2019inhibition	PRO-seq	ligation	experimental	False	1	3
SRR6498836	2662	Weissmiller2019inhibition	PRO-seq	ligation	experimental	False	1	1
SRR6498837	2663	Weissmiller2019inhibition	PRO-seq	ligation	experimental	False	2	2
SRR6498838	2664	Weissmiller2019inhibition	PRO-seq	ligation	experimental	False	3	3

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR6498830	H. sapiens	cell line	G401			dox-inducible EGFP (stable)
SRR6498831	H. sapiens	cell line	G401			dox-inducible EGFP (stable)
SRR6498832	H. sapiens	cell line	G401			dox-inducible EGFP (stable)
SRR6498833	H. sapiens	cell line	G401			dox-inducible OMO-MYC (stable)
SRR6498834	H. sapiens	cell line	G401			dox-inducible OMO-MYC (stable)
SRR6498835	H. sapiens	cell line	G401			dox-inducible OMO-MYC (stable)
SRR6498836	H. sapiens	cell line	G401			dox-inducible Snf5 (stable)
SRR6498837	H. sapiens	cell line	G401			dox-inducible Snf5 (stable)
SRR6498838	H. sapiens	cell line	G401			dox-inducible Snf5 (stable)

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR6498830	treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day
SRR6498831	treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day
SRR6498832	treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day
SRR6498833	treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day
SRR6498834	treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day
SRR6498835	treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day
SRR6498836	treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day
SRR6498837	treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day
SRR6498838	treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR6498830	75	79,259,329	0.37543	0.9098	2.25008	0.84757	1	1
SRR6498831	75	95,490,386	0.56768	0.8514	2.956	0.69692	2	1
SRR6498832	75	126,361,902	0.5268	0.904	2.61505	0.74243	2	1
SRR6498833	75	80,074,980	0.3633	0.9045	2.28265	0.84245	1	1
SRR6498834	75	95,023,036	0.51565	0.85	2.96953	0.70494	2	1
SRR6498835	75	124,683,476	0.46324	0.899	2.64176	0.78662	1	1
SRR6498836	75	93,827,747	0.41673	0.9019	2.11091	0.84254	1	1
SRR6498837	75	114,007,236	0.56606	0.8644	2.73179	0.71852	2	2
SRR6498838	75	118,010,332	0.77215	0.9004	2.38626	0.6959	3	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR6498830	30121	11011	11886	6251	27872	7006	12149	7473
SRR6498831	45330	13996	19288	11310	38916	8706	17503	11713
SRR6498832	40534	13917	16219	9876	41912	8185	19030	13282
SRR6498833	31925	11607	12249	7180	30725	7604	13554	8426
SRR6498834	46270	14773	18741	12353	41964	9116	18887	12938
SRR6498835	37841	14215	14143	9351	41381	7922	19050	12952
SRR6498836	36752	11301	14334	9947	34355	7213	15569	10279
SRR6498837	60824	14595	24423	20917	56141	9032	25537	20075
SRR6498838	33220	10791	13568	8483	29551	8223	12734	8163