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SRR6026781,SRR6026782,SRR6026783,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR6026781 | 2680 | Woo2018ted | PRO-seq | ligation | control | True | 1 | 1 |
| SRR6026782 | 2681 | Woo2018ted | PRO-seq | ligation | control | True | 1 | 2 |
| SRR6026783 | 2682 | Woo2018ted | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRR6026784 | 2683 | Woo2018ted | PRO-seq | ligation | experimental | False | 1 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR6026781 | H. sapiens | cell line | HEK293 | ||||
| SRR6026782 | H. sapiens | cell line | HEK293 | ||||
| SRR6026783 | H. sapiens | cell line | HEK293 | ||||
| SRR6026784 | H. sapiens | cell line | HEK293 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR6026781 | vehicle | DMSO | -2 hr | 0 hr | 2 hr |
| SRR6026782 | vehicle | DMSO | -2 hr | 0 hr | 2 hr |
| SRR6026783 | treatment | thapsigargin (2 microM) | -2 hr | 0 hr | 2 hr |
| SRR6026784 | treatment | thapsigargin (2 microM) | -2 hr | 0 hr | 2 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR6026781 | 24 | 52,358,111 | 0.2555 | 0.9608 | 4.87074 | 0.85255 | 1 | 2 |
| SRR6026782 | 24 | 25,050,838 | 0.22322 | 0.9692 | 4.41337 | 0.84292 | 1 | 2 |
| SRR6026783 | 24 | 50,020,103 | 0.25348 | 0.9672 | 4.77306 | 0.85641 | 1 | 2 |
| SRR6026784 | 24 | 59,670,588 | 0.27864 | 0.9591 | 5.20563 | 0.84643 | 1 | 3 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR6026781 | 38444 | 21074 | 13051 | 5885 | 25484 | 8358 | 11210 | 4611 |
| SRR6026782 | 32106 | 17107 | 11884 | 4001 | 20042 | 8864 | 8175 | 2504 |
| SRR6026783 | 37152 | 19868 | 12712 | 5642 | 24123 | 8028 | 10425 | 4248 |
| SRR6026784 | 40879 | 20661 | 14116 | 7231 | 28263 | 7900 | 12771 | 5852 |
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