DBNascent | Samples

SRZ8283303,SRZ8283305,SRZ8283307,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRZ8283303	2748	Yu2020negative	PRO-seq	ligation	control	True	2	1
SRZ8283305	2749	Yu2020negative	PRO-seq	ligation	experimental	False	2	1
SRZ8283307	2750	Yu2020negative	PRO-seq	ligation	control	False	2	1
SRZ8283309	2751	Yu2020negative	PRO-seq	ligation	experimental	False	2	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRZ8283303	M. musculus	primary cell	bone marrow derived macrophage
SRZ8283305	M. musculus	primary cell	bone marrow derived macrophage
SRZ8283307	M. musculus	primary cell	bone marrow derived macrophage			NelfB -/-
SRZ8283309	M. musculus	primary cell	bone marrow derived macrophage			NelfB -/-

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRZ8283303	no treatment		None	None	None
SRZ8283305	treatment	lipopolysaccharide (10 ng/mL)	-30 min	0 min	30 min
SRZ8283307	no treatment		None	None	None
SRZ8283309	treatment	lipopolysaccharide (10 ng/mL)	-30 min	0 min	30 min

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRZ8283303	150	24,283,633	0.45821	0.7065	5.13474	0.48679	2	3
SRZ8283305	150	23,183,659	0.46668	0.7291	4.57859	0.47797	2	2
SRZ8283307	150	26,294,693	0.4613	0.7492	4.85918	0.4973	2	2
SRZ8283309	150	26,239,388	0.46833	0.7302	4.57291	0.49093	2	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRZ8283303	25033	9666	8144	3852	17316	5633	5665	3253
SRZ8283305	22257	8023	7710	3760	16546	5185	5640	3210
SRZ8283307	25789	9886	8388	4266	18516	5584	6250	3777
SRZ8283309	23225	8324	8009	4062	17610	5343	6148	3531