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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR8483105	2882	Zhu2019non	GRO-seq	circularization	control	False	1	1
SRR8483106	2883	Zhu2019non	GRO-seq	circularization	experimental	False	2	1
SRR8483107	2884	Zhu2019non	GRO-seq	circularization	experimental	False	2	1
SRR8483108	2885	Zhu2019non	GRO-seq	circularization	experimental	False	2	1
SRR8483109	2886	Zhu2019non	GRO-seq	circularization	experimental	False	1	1
SRR8483110	2887	Zhu2019non	GRO-seq	circularization	experimental	False	1	1

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR8483105	H. sapiens	cell line	MCF7			shRNA control (stable)
SRR8483106	H. sapiens	cell line	MCF7			shRNA control (stable)
SRR8483107	H. sapiens	cell line	MCF7			shRNA Tead4 (stable)
SRR8483108	H. sapiens	cell line	MCF7			shRNA Tead4 (stable)
SRR8483109	H. sapiens	cell line	MCF7			shRNA Yap1 (stable)
SRR8483110	H. sapiens	cell line	MCF7			shRNA Yap1 (stable)

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR8483105	vehicle	ethanol	-1 hr	0 hr	1 hr
SRR8483106	treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr
SRR8483107	vehicle	ethanol	-1 hr	0 hr	1 hr
SRR8483108	treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr
SRR8483109	vehicle	ethanol	-1 hr	0 hr	1 hr
SRR8483110	treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR8483105	54	35,391,381	0.46997	0.8873	3.71253	0.67649	1	2
SRR8483106	54	46,687,901	0.53267	0.8959	3.69714	0.66045	2	2
SRR8483107	54	45,615,308	0.51252	0.8833	3.81496	0.68014	2	2
SRR8483108	54	45,990,930	0.50628	0.8872	3.80345	0.67993	2	2
SRR8483109	54	38,170,975	0.47476	0.8899	3.87225	0.69979	1	2
SRR8483110	54	43,025,821	0.44768	0.8796	3.9046	0.71741	1	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR8483105	24773	10074	10821	2834	15405	6755	5625	2402
SRR8483106	26991	10498	11985	3408	17479	6658	7009	2936
SRR8483107	30281	11155	13876	4047	18634	7171	7386	3280
SRR8483108	29947	10694	13800	4063	18268	6937	7328	3252
SRR8483109	29003	10827	13273	3567	17262	6887	6644	2935
SRR8483110	29420	11392	13126	3754	17711	6814	6827	3122