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Paper Details
Niskanen2018endothelial
| SRR5253457 |
| SRR5253460 |
| SRR5253461 |
| SRR5253462 |
| SRR5253465 |
| SRR5253468 |
| SRR5253469 |
| SRR5253470 |
| TDFs (visualization files) | Zip archive | 399 Mb |
| Read counts and bidirectional calls | Zip archive | 65 Mb |
| SRP accession | SRP099610 |
| GEO accession | GSE94872 |
| Protocol | GRO-seq |
| Organisms | H. sapiens |
| Library Prep | circularization |
| Spike-in | |
| Published | Yes |
| Year | 2018 |
| First Author | Niskanen |
| Last Author | Kaikkonen |
| DOI | 10.1093/nar/gkx1214 |
| Full citation | Henri Niskanen, Irina Tuszynska, Rafal Zaborowski, Merja Heinaniemi, Seppo Ya-Herttuala, Bartek Wilczynski, and Minna U. Kaikkonen. Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions. Nucleic acids research, 46(4):1724-1740, Feb 2018. |
|
Median QC score
|
2.0 |
| ATAC-seq? | No |
| RNA-seq? | No |
| ChIP-seq? | Yes |
| 3D Seq? | No |
| Other Seq? | Yes |