Explore DBNascent | browse or search sample metadata
Search
All Samples
Samples By Dataset
Advanced Search
Paper Details
Vian2018energetics
| SRR3619367 |
| SRR3619368 |
| SRR3619369 |
| SRR6794626 |
| SRR6794627 |
| SRR6794628 |
| SRR6794629 |
| TDFs (visualization files) | Zip archive | 1.6 Gb |
| Read counts and bidirectional calls | Zip archive | 46 Mb |
| SRP accession | SRP075985 , SRP105082 |
| GEO accession | GSE82144 , GSE98119 |
| Protocol | GRO-seq, RNA-seq variant |
| Organisms | M. musculus |
| Library Prep | circularization, ligation |
| Spike-in | |
| Published | Yes |
| Year | 2018 |
| First Author | Vian |
| Last Author | Casellas |
| DOI | 10.1016/j.cell.2018.03.072 |
| Full citation | Laura Vian, Aleksandra Pekowska, Suhas S.P. Rao, Kyong-Rim Kieffer-Kwon, Seolkyoung Jung, Laura Baranello, Su-Chen Huang, Laila El Khattabi, Marei Dose, Nathanael Pruett, Adrian L. Sanborn, Andres Canela, Yaakov Maman, Anna Oksanen, Wolfgang Resch, Xingwang Li, Byoungkoo Lee, Alexander L. Kovalchuk, Zhonghui Tang, Steevenson Nelson, Michele Di Pierro, Ryan R. Cheng, Ido Machol, Brian Glenn St Hilaire, Neva C. Durand, Muhammad S. Shamim, Elena K. Stamenova, Jose N. Onuchic, Yijun Ruan, Andre Nussenzweig, David Levens, Erez Lieberman Aiden, and Rafael Casellas. The energetics and physiological impact of cohesin extrusion. Cell, 173(5):1165-1178.e20, May 2018. |
|
Median QC score
|
3.0 |
| ATAC-seq? | No |
| RNA-seq? | Yes |
| ChIP-seq? | Yes |
| 3D Seq? | Yes |
| Other Seq? | Yes |