Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ7741175,SRZ7741177,SRZ7741179,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRZ7741175 | 10 | Aeby2020decapping | PRO-seq | ligation | experimental | False | 1 | 2 |
| SRZ7741177 | 11 | Aeby2020decapping | PRO-seq | ligation | control | True | 1 | 1 |
| SRZ7741179 | 12 | Aeby2020decapping | PRO-seq | ligation | control | True | 1 | 2 |
| SRZ7741169 | 7 | Aeby2020decapping | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRZ7741171 | 8 | Aeby2020decapping | PRO-seq | ligation | experimental | False | 1 | 2 |
| SRZ7741173 | 9 | Aeby2020decapping | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRR8364243 | 1 | Aeby2020decapping | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRR8364244 | 2 | Aeby2020decapping | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR8364245 | 3 | Aeby2020decapping | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRR8364246 | 4 | Aeby2020decapping | PRO-seq | ligation | experimental | False | 1 | 2 |
| SRR8364247 | 5 | Aeby2020decapping | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR8364248 | 6 | Aeby2020decapping | PRO-seq | ligation | experimental | False | 1 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRZ7741175 | M. musculus | cell line | ESC | clone J15 | C57BL/6J x CAST/EiJ | Dcp1a -/- | |
| SRZ7741177 | M. musculus | cell line | ESC | C57BL/6J x CAST/EiJ | |||
| SRZ7741179 | M. musculus | cell line | ESC | C57BL/6J x CAST/EiJ | |||
| SRZ7741169 | M. musculus | cell line | ESC | clone C17 | C57BL/6J x CAST/EiJ | Dcp1a -/- | |
| SRZ7741171 | M. musculus | cell line | ESC | clone C17 | C57BL/6J x CAST/EiJ | Dcp1a -/- | |
| SRZ7741173 | M. musculus | cell line | ESC | clone J15 | C57BL/6J x CAST/EiJ | Dcp1a -/- | |
| SRR8364243 | M. musculus | cell line | ESC | C57BL/6J x CAST/EiJ | Tsix +/- | ||
| SRR8364244 | M. musculus | cell line | ESC | C57BL/6J x CAST/EiJ | Tsix +/- | ||
| SRR8364245 | M. musculus | cell line | ESC | C57BL/6J x CAST/EiJ | Tsix +/- | ||
| SRR8364246 | M. musculus | cell line | ESC | C57BL/6J x CAST/EiJ | Tsix +/- | ||
| SRR8364247 | M. musculus | cell line | ESC | C57BL/6J x CAST/EiJ | Tsix +/- | ||
| SRR8364248 | M. musculus | cell line | ESC | C57BL/6J x CAST/EiJ | Tsix +/- |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRZ7741175 | no treatment | None | None | None | |
| SRZ7741177 | no treatment | None | None | None | |
| SRZ7741179 | no treatment | None | None | None | |
| SRZ7741169 | no treatment | None | None | None | |
| SRZ7741171 | no treatment | None | None | None | |
| SRZ7741173 | no treatment | None | None | None | |
| SRR8364243 | no treatment | None | None | None | |
| SRR8364244 | no treatment | None | None | None | |
| SRR8364245 | treatment | embryoid body differentiation protocol | -3 day | 0 day | 3 day |
| SRR8364246 | treatment | embryoid body differentiation protocol | -3 day | 0 day | 3 day |
| SRR8364247 | treatment | embryoid body differentiation protocol | -7 day | 0 day | 7 day |
| SRR8364248 | treatment | embryoid body differentiation protocol | -7 day | 0 day | 7 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRZ7741175 | 51 | 26,501,645 | 0.27262 | 0.8031 | 4.49347 | 0.64366 | 1 | 2 |
| SRZ7741177 | 51 | 28,185,652 | 0.27787 | 0.8023 | 4.53428 | 0.6379 | 1 | 2 |
| SRZ7741179 | 51 | 26,867,369 | 0.26187 | 0.7987 | 4.21226 | 0.65334 | 1 | 2 |
| SRZ7741169 | 51 | 31,566,055 | 0.22407 | 0.7898 | 2.90159 | 0.70694 | 1 | 2 |
| SRZ7741171 | 51 | 27,805,293 | 0.27132 | 0.8044 | 4.4059 | 0.64418 | 1 | 2 |
| SRZ7741173 | 51 | 24,996,973 | 0.27224 | 0.8033 | 4.38588 | 0.64148 | 1 | 2 |
| SRR8364243 | 51 | 54,206,834 | 0.47863 | 0.7977 | 4.74061 | 0.60201 | 1 | 2 |
| SRR8364244 | 51 | 56,976,150 | 0.69477 | 0.7784 | 4.8985 | 0.50807 | 3 | 2 |
| SRR8364245 | 51 | 32,706,367 | 0.3562 | 0.801 | 5.88963 | 0.61188 | 1 | 3 |
| SRR8364246 | 51 | 48,370,650 | 0.46386 | 0.8046 | 6.05085 | 0.60101 | 1 | 3 |
| SRR8364247 | 51 | 33,185,131 | 0.73811 | 0.8427 | 4.67537 | 0.42163 | 3 | 2 |
| SRR8364248 | 51 | 38,836,096 | 0.39362 | 0.8582 | 5.71521 | 0.5784 | 1 | 3 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRZ7741175 | 55402 | 12041 | 19474 | 20021 | 39026 | 8570 | 13621 | 13675 |
| SRZ7741177 | 56228 | 12175 | 19641 | 20493 | 39997 | 8647 | 14019 | 14055 |
| SRZ7741179 | 52299 | 11565 | 18193 | 18878 | 37993 | 8423 | 13426 | 13212 |
| SRZ7741169 | 36663 | 9599 | 11904 | 12248 | 27186 | 6808 | 9259 | 8878 |
| SRZ7741171 | 53753 | 12063 | 18691 | 19239 | 38831 | 8426 | 13786 | 13502 |
| SRZ7741173 | 52932 | 11486 | 18689 | 18924 | 37547 | 8495 | 13095 | 13004 |
| SRR8364243 | 79544 | 13648 | 28152 | 32814 | 63678 | 9316 | 23033 | 26349 |
| SRR8364244 | 63792 | 11124 | 23087 | 24891 | 51616 | 9414 | 18053 | 20172 |
| SRR8364245 | 69002 | 12968 | 25467 | 25777 | 50841 | 9265 | 18556 | 18488 |
| SRR8364246 | 72314 | 13438 | 26339 | 27670 | 57441 | 9215 | 21224 | 21933 |
| SRR8364247 | 22816 | 8007 | 8547 | 4432 | 21882 | 8342 | 7699 | 4046 |
| SRR8364248 | 49038 | 13261 | 18523 | 14612 | 39489 | 8599 | 15852 | 11666 |
Top