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Sample Details

SRR1806561,SRR1806562,SRR1806563,...
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Technical details
Sample name Sample ID Paper identifier Protocol Library prep Control/Experimental Wildtype & Untreated QC score Replicate
SRR1806561 100 Andrade2015dna Bru-seq ligation experimental False 2 2
SRR1806562 101 Andrade2015dna Bru-seq ligation experimental False 4 1
SRR1806563 102 Andrade2015dna Bru-seq ligation experimental False 4 2
SRR1806564 103 Andrade2015dna Bru-seq ligation experimental False 1 1
SRR1806565 104 Andrade2015dna Bru-seq ligation experimental False 1 2
SRR1806566 105 Andrade2015dna Bru-seq ligation control False 1 1
SRR1806567 106 Andrade2015dna Bru-seq ligation control False 1 2
SRR1806568 107 Andrade2015dna Bru-seq ligation experimental False 4 1
SRR1806569 108 Andrade2015dna Bru-seq ligation experimental False 4 2
SRR1806570 109 Andrade2015dna Bru-seq ligation experimental False 4 1
SRR1806571 110 Andrade2015dna Bru-seq ligation experimental False 4 2
SRR1806572 111 Andrade2015dna Bru-seq ligation experimental False 3 1
SRR1806573 112 Andrade2015dna Bru-seq ligation experimental False 3 2
SRR1806574 113 Andrade2015dna Bru-seq ligation experimental False 2 1
SRR1806575 114 Andrade2015dna Bru-seq ligation experimental False 2 2
SRR1806576 115 Andrade2015dna Bru-seq ligation control False 1 1
SRR1806577 116 Andrade2015dna Bru-seq ligation control False 1 2
SRR1806578 117 Andrade2015dna Bru-seq ligation experimental False 3 1
SRR1806579 118 Andrade2015dna Bru-seq ligation experimental False 3 2
SRR1806580 119 Andrade2015dna Bru-seq ligation experimental False 3 1
SRR1806581 120 Andrade2015dna Bru-seq ligation experimental False 3 2
SRR1806582 121 Andrade2015dna Bru-seq ligation experimental False 3 1
SRR1806583 122 Andrade2015dna Bru-seq ligation experimental False 3 2
SRR1806584 123 Andrade2015dna Bru-seq ligation experimental False 2 1
SRR1806585 124 Andrade2015dna Bru-seq ligation experimental False 2 2
SRR1806546 85 Andrade2015dna Bru-seq ligation control True 1 1
SRR1806547 86 Andrade2015dna Bru-seq ligation control True 1 2
SRR1806548 87 Andrade2015dna Bru-seq ligation experimental False 2 1
SRR1806549 88 Andrade2015dna Bru-seq ligation experimental False 2 2
SRR1806550 89 Andrade2015dna Bru-seq ligation experimental False 3 1
SRR1806551 90 Andrade2015dna Bru-seq ligation experimental False 3 2
SRR1806552 91 Andrade2015dna Bru-seq ligation experimental False 3 1
SRR1806553 92 Andrade2015dna Bru-seq ligation experimental False 3 2
SRR1806554 93 Andrade2015dna Bru-seq ligation experimental False 2 1
SRR1806555 94 Andrade2015dna Bru-seq ligation experimental False 2 2
SRR1806556 95 Andrade2015dna Bru-seq ligation control True 1 1
SRR1806557 96 Andrade2015dna Bru-seq ligation control True 1 2
SRR1806558 97 Andrade2015dna Bru-seq ligation experimental False 3 1
SRR1806559 98 Andrade2015dna Bru-seq ligation experimental False 3 2
SRR1806560 99 Andrade2015dna Bru-seq ligation experimental False 2 1
Cellular details
Sample name Organism Sample type Cell type Clone/Individual Strain Genotype Construct
SRR1806561 H. sapiens cell line HF1
SRR1806562 H. sapiens cell line HF1
SRR1806563 H. sapiens cell line HF1
SRR1806564 H. sapiens cell line HF1
SRR1806565 H. sapiens cell line HF1
SRR1806566 H. sapiens primary cell skin fibroblast GM14867 Xpc XP67TMA mut
SRR1806567 H. sapiens primary cell skin fibroblast GM14867 Xpc XP67TMA mut
SRR1806568 H. sapiens primary cell skin fibroblast GM14867 Xpc XP67TMA mut
SRR1806569 H. sapiens primary cell skin fibroblast GM14867 Xpc XP67TMA mut
SRR1806570 H. sapiens primary cell skin fibroblast GM14867 Xpc XP67TMA mut
SRR1806571 H. sapiens primary cell skin fibroblast GM14867 Xpc XP67TMA mut
SRR1806572 H. sapiens primary cell skin fibroblast GM14867 Xpc XP67TMA mut
SRR1806573 H. sapiens primary cell skin fibroblast GM14867 Xpc XP67TMA mut
SRR1806574 H. sapiens primary cell skin fibroblast GM14867 Xpc XP67TMA mut
SRR1806575 H. sapiens primary cell skin fibroblast GM14867 Xpc XP67TMA mut
SRR1806576 H. sapiens primary cell skin fibroblast GM00739 Csb CS1AN mut
SRR1806577 H. sapiens primary cell skin fibroblast GM00739 Csb CS1AN mut
SRR1806578 H. sapiens primary cell skin fibroblast GM00739 Csb CS1AN mut
SRR1806579 H. sapiens primary cell skin fibroblast GM00739 Csb CS1AN mut
SRR1806580 H. sapiens primary cell skin fibroblast GM00739 Csb CS1AN mut
SRR1806581 H. sapiens primary cell skin fibroblast GM00739 Csb CS1AN mut
SRR1806582 H. sapiens primary cell skin fibroblast GM00739 Csb CS1AN mut
SRR1806583 H. sapiens primary cell skin fibroblast GM00739 Csb CS1AN mut
SRR1806584 H. sapiens primary cell skin fibroblast GM00739 Csb CS1AN mut
SRR1806585 H. sapiens primary cell skin fibroblast GM00739 Csb CS1AN mut
SRR1806546 H. sapiens cell line HF1
SRR1806547 H. sapiens cell line HF1
SRR1806548 H. sapiens cell line HF1
SRR1806549 H. sapiens cell line HF1
SRR1806550 H. sapiens cell line HF1
SRR1806551 H. sapiens cell line HF1
SRR1806552 H. sapiens cell line HF1
SRR1806553 H. sapiens cell line HF1
SRR1806554 H. sapiens cell line HF1
SRR1806555 H. sapiens cell line HF1
SRR1806556 H. sapiens cell line HF1
SRR1806557 H. sapiens cell line HF1
SRR1806558 H. sapiens cell line HF1
SRR1806559 H. sapiens cell line HF1
SRR1806560 H. sapiens cell line HF1
Conditions
Sample name Condition type Treatment Start time End time Duration
SRR1806561 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -7210 s -7200 s 10 s
SRR1806562 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -21610 s -21600 s 10 s
SRR1806563 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -21610 s -21600 s 10 s
SRR1806564 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -86410 s -86400 s 10 s
SRR1806565 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -86410 s -86400 s 10 s
SRR1806566 treatment bromouridine (2 mM) -30 min 0 min 30 min
SRR1806567 treatment bromouridine (2 mM) -30 min 0 min 30 min
SRR1806568 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -1810 s -1800 s 10 s
SRR1806569 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -1810 s -1800 s 10 s
SRR1806570 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -7210 s -7200 s 10 s
SRR1806571 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -7210 s -7200 s 10 s
SRR1806572 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -21610 s -21600 s 10 s
SRR1806573 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -21610 s -21600 s 10 s
SRR1806574 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -86410 s -86400 s 10 s
SRR1806575 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -86410 s -86400 s 10 s
SRR1806576 treatment bromouridine (2 mM) -30 min 0 min 30 min
SRR1806577 treatment bromouridine (2 mM) -30 min 0 min 30 min
SRR1806578 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -1810 s -1800 s 10 s
SRR1806579 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -1810 s -1800 s 10 s
SRR1806580 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -7210 s -7200 s 10 s
SRR1806581 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -7210 s -7200 s 10 s
SRR1806582 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -21610 s -21600 s 10 s
SRR1806583 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -21610 s -21600 s 10 s
SRR1806584 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -86410 s -86400 s 10 s
SRR1806585 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -86410 s -86400 s 10 s
SRR1806546 treatment bromouridine (2 mM) -30 min 0 min 30 min
SRR1806547 treatment bromouridine (2 mM) -30 min 0 min 30 min
SRR1806548 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -1820 s -1800 s 20 s
SRR1806549 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -1820 s -1800 s 20 s
SRR1806550 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -7220 s -7200 s 20 s
SRR1806551 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -7220 s -7200 s 20 s
SRR1806552 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -21620 s -21600 s 20 s
SRR1806553 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -21620 s -21600 s 20 s
SRR1806554 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -86420 s -86400 s 20 s
SRR1806555 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -86420 s -86400 s 20 s
SRR1806556 treatment bromouridine (2 mM) -30 min 0 min 30 min
SRR1806557 treatment bromouridine (2 mM) -30 min 0 min 30 min
SRR1806558 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -1810 s -1800 s 10 s
SRR1806559 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -1810 s -1800 s 10 s
SRR1806560 treatment bromouridine (2 mM) -30 min 0 min 30 min
treatment ultraviolet C (1 J/m^2/s) -7210 s -7200 s 10 s
Sample metrics
Sample name Raw read length Trim read depth Duplication proportion Proportion reads mapped Exon/intron ratio Unique read proportion Sample QC score Sample NRO score
SRR1806561 52 30,532,097 0.63393 0.9608 2.10887 0.52233 2 1
SRR1806562 52 33,795,615 0.84122 0.9625 2.06461 0.34213 4 2
SRR1806563 52 33,554,390 0.84235 0.9633 2.06657 0.3407 4 2
SRR1806564 52 27,280,900 0.42224 0.9588 1.72143 0.71416 1 1
SRR1806565 52 27,157,786 0.42268 0.9597 1.72473 0.71354 1 1
SRR1806566 52 34,248,656 0.4799 0.9669 2.44522 0.61909 1 1
SRR1806567 52 34,403,338 0.48071 0.9662 2.44608 0.61898 1 1
SRR1806568 52 34,987,857 0.94286 0.9689 6.62418 0.09098 4 3
SRR1806569 52 35,211,615 0.94323 0.9686 6.59935 0.09087 4 3
SRR1806570 52 33,762,637 0.88752 0.9627 2.92815 0.21044 4 1
SRR1806571 52 33,935,428 0.88812 0.9622 2.91387 0.21011 4 1
SRR1806572 52 49,522,177 0.68098 0.9706 2.47217 0.46146 3 2
SRR1806573 52 49,720,206 0.68183 0.9701 2.4685 0.46115 3 1
SRR1806574 52 35,134,233 0.51615 0.9682 2.73953 0.59145 2 1
SRR1806575 52 35,287,748 0.51696 0.9676 2.73885 0.59103 2 1
SRR1806576 52 33,913,388 0.45934 0.9651 1.5972 0.67679 1 3
SRR1806577 52 33,670,995 0.4582 0.9632 1.59877 0.67689 1 3
SRR1806578 52 36,966,941 0.74922 0.973 3.35697 0.30798 3 2
SRR1806579 52 36,643,847 0.74893 0.9715 3.36618 0.30781 3 2
SRR1806580 52 33,513,615 0.73429 0.9735 3.2175 0.31852 3 2
SRR1806581 52 33,238,647 0.73408 0.9719 3.21456 0.31838 3 2
SRR1806582 52 35,563,007 0.71891 0.9723 2.7434 0.36718 3 2
SRR1806583 52 35,279,802 0.7186 0.9709 2.74066 0.36634 3 2
SRR1806584 52 51,695,567 0.60928 0.9712 2.01933 0.54589 2 2
SRR1806585 52 51,301,895 0.60826 0.9695 2.01593 0.54567 2 2
SRR1806546 52 26,447,415 0.36604 0.9692 2.06116 0.70769 1 2
SRR1806547 52 26,119,093 0.36508 0.9689 2.06034 0.70767 1 2
SRR1806548 52 22,501,770 0.64623 0.9734 3.17555 0.40444 2 2
SRR1806549 52 22,218,961 0.64554 0.9731 3.17329 0.40392 2 2
SRR1806550 52 27,002,426 0.70721 0.9727 2.45571 0.43782 3 1
SRR1806551 52 26,705,127 0.70554 0.9724 2.45916 0.43697 3 1
SRR1806552 52 26,605,841 0.69818 0.9708 2.29412 0.44407 3 1
SRR1806553 52 26,307,776 0.69629 0.9704 2.29049 0.44379 3 1
SRR1806554 52 29,081,951 0.59926 0.959 1.99851 0.5821 2 1
SRR1806555 52 28,914,629 0.59996 0.96 2.003 0.58101 2 1
SRR1806556 52 39,248,787 0.42139 0.9594 1.79958 0.71409 1 2
SRR1806557 52 38,973,593 0.42145 0.9604 1.80201 0.71338 1 2
SRR1806558 52 28,482,636 0.70606 0.9617 2.72489 0.40332 3 1
SRR1806559 52 28,338,060 0.70661 0.9625 2.72821 0.40233 3 1
SRR1806560 52 30,738,528 0.63362 0.9599 2.10657 0.5231 2 1
Bidirectionals
Sample name Tfit total bidirs Tfit promoter bidirs Tfit intronic bidirs Tfit intergenic bidirs dREG total bidirs dREG promoter bidirs dREG intronic bidirs dREG intergenic bidirs
SRR1806561 7609 2228 3808 994 6384 2089 3149 877
SRR1806562 2730 624 1597 159 2287 670 1164 314
SRR1806563 2650 614 1583 160 2253 689 1145 310
SRR1806564 3656 1075 1909 267 4015 1263 2025 543
SRR1806565 3637 1020 1913 236 4021 1303 2005 544
SRR1806566 4318 1262 2170 275 4876 1517 2331 665
SRR1806567 4363 1276 2208 260 4912 1517 2321 693
SRR1806568 2814 582 1350 100 1430 222 647 281
SRR1806569 2860 622 1396 88 1476 258 670 292
SRR1806570 2647 653 1488 126 1786 527 831 328
SRR1806571 2737 673 1549 131 1768 512 843 311
SRR1806572 4072 1094 1971 366 5866 1806 2873 784
SRR1806573 4172 1162 1987 405 5852 1818 2897 736
SRR1806574 6506 1894 3448 403 6190 2127 2829 777
SRR1806575 6347 1820 3350 411 6175 2079 2829 786
SRR1806576 2338 403 1338 226 3717 657 2215 645
SRR1806577 2421 413 1353 221 3648 671 2178 634
SRR1806578 6020 1634 2945 518 4561 1633 2009 544
SRR1806579 6039 1557 3009 531 4470 1608 1940 541
SRR1806580 4188 897 2112 352 3806 1155 1808 497
SRR1806581 4207 932 2130 346 3828 1171 1832 489
SRR1806582 3928 824 2026 309 4030 1092 1995 568
SRR1806583 3946 772 2037 322 3976 1094 1995 560
SRR1806584 7144 1673 3631 907 7686 2193 3840 1132
SRR1806585 7121 1722 3794 796 7525 2178 3783 1097
SRR1806546 3557 841 2011 287 3933 1090 2106 564
SRR1806547 3492 877 1978 284 3897 1072 2125 543
SRR1806548 12196 3446 6238 1705 6264 2236 2818 938
SRR1806549 12053 3418 6089 1670 6110 2197 2726 910
SRR1806550 10445 3245 5620 1030 6455 2530 2833 701
SRR1806551 10433 3209 5646 1029 6540 2469 2871 718
SRR1806552 5218 1625 2633 339 4006 1566 1728 398
SRR1806553 5195 1632 2623 368 3986 1588 1711 389
SRR1806554 5338 1679 2596 437 4688 1716 2109 574
SRR1806555 5255 1708 2582 388 4646 1683 2103 578
SRR1806556 4085 1093 2055 415 5552 1397 2983 911
SRR1806557 4104 1128 2102 418 5454 1386 2942 885
SRR1806558 11275 3498 5636 1351 6687 2375 3049 974
SRR1806559 11282 3482 5650 1364 6619 2424 2968 962
SRR1806560 7755 2218 3949 969 6457 2092 3166 897
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