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Sample Details

SRR11024629,SRR11024631,SRR11024632,...
Downloads
Gene read counts Bidirectional read counts Tfit regions dREG regions
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Technical details
Sample name Sample ID Paper identifier Protocol Library prep Control/Experimental Wildtype & Untreated QC score Replicate
SRR11024629 160 Aoi2020nelf PRO-cap ligation experimental False 3 1
SRR11024631 161 Aoi2020nelf PRO-cap ligation experimental False 2 1
SRR11024632 162 Aoi2020nelf PRO-cap ligation experimental False 2 2
SRR11024633 163 Aoi2020nelf PRO-cap ligation experimental False 2 2
SRR11024606 137 Aoi2020nelf PRO-seq ligation experimental False 2 1
SRR11024607 138 Aoi2020nelf PRO-seq ligation experimental False 2 1
SRR11024608 139 Aoi2020nelf PRO-seq ligation experimental False 2 1
SRR11024609 140 Aoi2020nelf PRO-seq ligation experimental False 3 1
SRR11024610 141 Aoi2020nelf PRO-seq ligation experimental False 2 1
SRR11024611 142 Aoi2020nelf PRO-seq ligation experimental False 2 1
SRR11024612 143 Aoi2020nelf PRO-seq ligation experimental False 1 1
SRR11024613 144 Aoi2020nelf PRO-seq ligation control False 1 1
SRR11024614 145 Aoi2020nelf PRO-seq ligation experimental False 1 1
SRR11024615 146 Aoi2020nelf PRO-seq ligation experimental False 1 1
SRR11024616 147 Aoi2020nelf PRO-seq ligation experimental False 1 1
SRR11024617 148 Aoi2020nelf PRO-seq ligation experimental False 2 1
SRR11024618 149 Aoi2020nelf PRO-seq ligation experimental False 3 1
SRR11024619 150 Aoi2020nelf PRO-seq ligation experimental False 3 1
SRR11024620 151 Aoi2020nelf PRO-seq ligation experimental False 1 1
SRR11024621 152 Aoi2020nelf PRO-seq ligation experimental False 3 1
SRR11024622 153 Aoi2020nelf PRO-seq ligation experimental False 3 1
SRR11024623 154 Aoi2020nelf PRO-seq ligation experimental False 1 1
SRR11024624 155 Aoi2020nelf PRO-seq ligation experimental False 1 1
SRR11024625 156 Aoi2020nelf PRO-seq ligation experimental False 1 1
SRR11024626 157 Aoi2020nelf PRO-seq ligation experimental False 3 2
SRR11024627 158 Aoi2020nelf PRO-seq ligation experimental False 3 2
SRR11024628 159 Aoi2020nelf PRO-seq ligation experimental False 4 2
Cellular details
Sample name Organism Sample type Cell type Clone/Individual Strain Genotype Construct
SRR11024629 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024631 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024632 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024633 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024606 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024607 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024608 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024609 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024610 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-E auxin-inducible degron
SRR11024611 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-E auxin-inducible degron
SRR11024612 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-E auxin-inducible degron
SRR11024613 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in)
SRR11024614 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in)
SRR11024615 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in)
SRR11024616 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024617 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024618 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024619 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024620 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024621 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024622 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024623 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024624 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024625 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024626 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024627 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
SRR11024628 H. sapiens cell line DLD1 Flp-In Tir1 (Flp knock-in); Nelf-C auxin-inducible degron
Conditions
Sample name Condition type Treatment Start time End time Duration
SRR11024629 no treatment None None None
SRR11024631 treatment auxin (500 microM) -2 hr 0 hr 2 hr
SRR11024632 no treatment None None None
SRR11024633 treatment auxin (500 microM) -2 hr 0 hr 2 hr
SRR11024606 no treatment None None None
SRR11024607 treatment auxin (500 microM) -1 hr 0 hr 1 hr
SRR11024608 treatment auxin (500 microM) -4 hr 0 hr 4 hr
SRR11024609 treatment auxin (500 microM) -1 day 0 day 1 day
SRR11024610 no treatment None None None
SRR11024611 treatment auxin (500 microM) -2 hr 0 hr 2 hr
SRR11024612 treatment auxin (500 microM) -1 day 0 day 1 day
SRR11024613 no treatment None None None
SRR11024614 treatment auxin (500 microM) -2 hr 0 hr 2 hr
SRR11024615 treatment auxin (500 microM) -1 day 0 day 1 day
SRR11024616 vehicle DMSO -1 hr 0 hr 1 hr
SRR11024617 treatment auxin (500 microM) -2 hr 0 hr 2 hr
vehicle DMSO -3 hr -2 hr 1 hr
SRR11024618 treatment auxin (500 microM) -2 hr 0 hr 2 hr
treatment flavopiridol (1 microM) -3 hr -2 hr 1 hr
SRR11024619 treatment auxin (500 microM) -2 hr 0 hr 2 hr
treatment flavopiridol (1 microM) -3 hr -2 hr 1 hr
SRR11024620 vehicle DMSO -1 hr 0 hr 1 hr
SRR11024621 treatment NVP2 (250 nM) -1 hr 0 hr 1 hr
SRR11024622 treatment NVP2 (250 nM) -3 hr -2 hr 1 hr
treatment auxin (500 microM) -2 hr 0 hr 2 hr
SRR11024623 no treatment None None None
SRR11024624 treatment heat shock (42 Celsius) -1 hr 0 hr 1 hr
SRR11024625 treatment auxin (500 microM) -3 hr -1 hr 2 hr
treatment heat shock (42 Celsius) -1 hr 0 hr 1 hr
SRR11024626 no treatment None None None
SRR11024627 treatment heat shock (42 Celsius) -1 hr 0 hr 1 hr
SRR11024628 treatment auxin (500 microM) -3 hr -1 hr 2 hr
treatment heat shock (42 Celsius) -1 hr 0 hr 1 hr
Sample metrics
Sample name Raw read length Trim read depth Duplication proportion Proportion reads mapped Exon/intron ratio Unique read proportion Sample QC score Sample NRO score
SRR11024629 35 120,768,080 0.68739 0.8367 10.4895 0.43588 3 5
SRR11024631 35 112,504,928 0.59924 0.8646 13.0153 0.43491 2 5
SRR11024632 35 115,481,126 0.61832 0.8324 10.7452 0.43712 2 5
SRR11024633 35 120,149,779 0.57645 0.8674 12.8303 0.4418 2 5
SRR11024606 35 139,652,874 0.52907 0.8891 3.55021 0.73065 2 2
SRR11024607 35 120,221,378 0.61968 0.8791 4.6285 0.66768 2 2
SRR11024608 35 136,346,944 0.56549 0.8636 4.82578 0.67961 2 2
SRR11024609 35 49,420,793 0.73632 0.8124 3.83893 0.52184 3 2
SRR11024610 35 91,619,642 0.5126 0.8319 3.23085 0.73246 2 2
SRR11024611 35 90,800,104 0.51914 0.8382 3.77162 0.72734 2 2
SRR11024612 35 75,105,512 0.45563 0.7975 3.26108 0.74981 1 2
SRR11024613 35 70,423,640 0.4034 0.866 3.20843 0.73583 1 2
SRR11024614 35 70,747,532 0.40536 0.8439 3.51591 0.73433 1 2
SRR11024615 35 73,675,230 0.40581 0.8585 3.41071 0.73427 1 2
SRR11024616 35 49,160,107 0.4159 0.8327 3.43754 0.69774 1 2
SRR11024617 35 47,230,687 0.5253 0.7893 4.30981 0.57923 2 2
SRR11024618 35 44,816,368 0.79936 0.8447 9.6068 0.29964 3 5
SRR11024619 35 49,964,752 0.74044 0.8754 6.34315 0.38194 3 3
SRR11024620 35 147,727,710 0.4525 0.9171 2.64922 0.77862 1 1
SRR11024621 35 98,276,555 0.69499 0.8843 4.85809 0.46097 3 2
SRR11024622 35 137,392,834 0.67468 0.897 4.04545 0.52405 3 2
SRR11024623 35 143,233,998 0.469 0.9208 2.55372 0.75796 1 1
SRR11024624 35 64,476,330 0.38778 0.8833 3.34971 0.80346 1 2
SRR11024625 35 101,433,898 0.46425 0.8789 3.63086 0.80836 1 2
SRR11024626 35 70,843,128 0.69862 0.809 4.63562 0.48815 3 2
SRR11024627 63 14,931,413 0.70748 0.6936 7.09455 0.31519 3 4
SRR11024628 56 46,000,579 0.85144 0.7741 5.61452 0.36046 4 3
Bidirectionals
Sample name Tfit total bidirs Tfit promoter bidirs Tfit intronic bidirs Tfit intergenic bidirs dREG total bidirs dREG promoter bidirs dREG intronic bidirs dREG intergenic bidirs
SRR11024629 None None None None None None None None
SRR11024631 None None None None None None None None
SRR11024632 None None None None None None None None
SRR11024633 None None None None None None None None
SRR11024606 None None None None None None None None
SRR11024607 None None None None None None None None
SRR11024608 None None None None None None None None
SRR11024609 None None None None None None None None
SRR11024610 None None None None None None None None
SRR11024611 None None None None None None None None
SRR11024612 None None None None None None None None
SRR11024613 None None None None None None None None
SRR11024614 None None None None None None None None
SRR11024615 None None None None None None None None
SRR11024616 None None None None None None None None
SRR11024617 None None None None None None None None
SRR11024618 None None None None None None None None
SRR11024619 None None None None None None None None
SRR11024620 None None None None None None None None
SRR11024621 None None None None None None None None
SRR11024622 None None None None None None None None
SRR11024623 None None None None None None None None
SRR11024624 None None None None None None None None
SRR11024625 None None None None None None None None
SRR11024626 None None None None None None None None
SRR11024627 None None None None None None None None
SRR11024628 None None None None None None None None
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