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SRR10808263,SRR10808264,SRR10836717,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR10808263 | 172 | Ba2020ctcf | GRO-seq | ligation | control | False | 1 | 1 |
| SRR10808264 | 173 | Ba2020ctcf | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR10836717 | 174 | Ba2020ctcf | GRO-seq | ligation | control | False | 1 | 2 |
| SRR10836718 | 175 | Ba2020ctcf | GRO-seq | ligation | experimental | False | 1 | 2 |
| SRR10836719 | 176 | Ba2020ctcf | GRO-seq | ligation | control | False | 1 | 3 |
| SRR10836720 | 177 | Ba2020ctcf | GRO-seq | ligation | experimental | False | 1 | 3 |
| SRR10836721 | 178 | Ba2020ctcf | GRO-seq | ligation | control | False | 1 | 1 |
| SRR10836722 | 179 | Ba2020ctcf | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR10836723 | 180 | Ba2020ctcf | GRO-seq | ligation | control | False | 1 | 2 |
| SRR10836724 | 181 | Ba2020ctcf | GRO-seq | ligation | experimental | False | 1 | 2 |
| SRR10836725 | 182 | Ba2020ctcf | GRO-seq | ligation | control | False | 4 | 3 |
| SRR10836726 | 183 | Ba2020ctcf | GRO-seq | ligation | experimental | False | 3 | 3 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR10808263 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 + | ||
| SRR10808264 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; CTCF auxin-inducible degron | ||
| SRR10836717 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 + | ||
| SRR10836718 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; CTCF auxin-inducible degron | ||
| SRR10836719 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 + | ||
| SRR10836720 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; CTCF auxin-inducible degron | ||
| SRR10836721 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; Rad21 auxin-inducible degron | ||
| SRR10836722 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; Rad21 auxin-inducible degron | ||
| SRR10836723 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; Rad21 auxin-inducible degron | ||
| SRR10836724 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; Rad21 auxin-inducible degron | ||
| SRR10836725 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; Rad21 auxin-inducible degron | ||
| SRR10836726 | M. musculus | cell line | v-Abl pro B cell | C57BL/6 | Rag1 -/-; Emu-Bcl2 +; Rad21 auxin-inducible degron |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR10808263 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| vehicle | DMSO | -102 hr | -96 hr | 6 hr | |
| SRR10808264 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| treatment | indoleacetic acid (500 microM) | -102 hr | 0 hr | 102 hr | |
| SRR10836717 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| vehicle | DMSO | -102 hr | -96 hr | 6 hr | |
| SRR10836718 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| treatment | indoleacetic acid (500 microM) | -102 hr | 0 hr | 102 hr | |
| SRR10836719 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| vehicle | DMSO | -102 hr | -96 hr | 6 hr | |
| SRR10836720 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| treatment | indoleacetic acid (500 microM) | -102 hr | 0 hr | 102 hr | |
| SRR10836721 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| vehicle | DMSO | -102 hr | -96 hr | 6 hr | |
| SRR10836722 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| treatment | indoleacetic acid (500 microM) | -102 hr | 0 hr | 102 hr | |
| SRR10836723 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| vehicle | DMSO | -102 hr | -96 hr | 6 hr | |
| SRR10836724 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| treatment | indoleacetic acid (500 microM) | -102 hr | 0 hr | 102 hr | |
| SRR10836725 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| vehicle | DMSO | -102 hr | -96 hr | 6 hr | |
| SRR10836726 | treatment | STI-571 (3 microM) | -4 day | 0 day | 4 day |
| treatment | indoleacetic acid (500 microM) | -102 hr | 0 hr | 102 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR10808263 | 76 | 36,611,561 | 0.47959 | 0.7975 | 1.96835 | 0.63111 | 1 | 1 |
| SRR10808264 | 76 | 32,847,644 | 0.45547 | 0.8068 | 1.88492 | 0.63508 | 1 | 1 |
| SRR10836717 | 76 | 45,561,504 | 0.21773 | 0.8086 | 2.25299 | 0.77424 | 1 | 1 |
| SRR10836718 | 76 | 30,917,339 | 0.26006 | 0.8211 | 3.01111 | 0.7044 | 1 | 2 |
| SRR10836719 | 76 | 41,653,978 | 0.19915 | 0.8094 | 2.17374 | 0.77676 | 1 | 1 |
| SRR10836720 | 76 | 35,940,082 | 0.15975 | 0.8323 | 2.47035 | 0.80087 | 1 | 1 |
| SRR10836721 | 76 | 32,328,772 | 0.2509 | 0.8134 | 2.21195 | 0.75299 | 1 | 1 |
| SRR10836722 | 76 | 38,754,071 | 0.29742 | 0.8041 | 2.20428 | 0.73341 | 1 | 1 |
| SRR10836723 | 76 | 42,117,440 | 0.26993 | 0.8045 | 2.1698 | 0.73618 | 1 | 1 |
| SRR10836724 | 76 | 40,912,190 | 0.32623 | 0.79 | 2.25337 | 0.67881 | 1 | 1 |
| SRR10836725 | 76 | 25,773,980 | 0.81205 | 0.8091 | 2.00748 | 0.29921 | 4 | 1 |
| SRR10836726 | 76 | 31,797,400 | 0.70883 | 0.7951 | 1.96906 | 0.44212 | 3 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR10808263 | 32186 | 9130 | 12442 | 6460 | 21288 | 5113 | 7585 | 5937 |
| SRR10808264 | 32578 | 9497 | 12394 | 6336 | 20396 | 5293 | 6969 | 5498 |
| SRR10836717 | 36059 | 10592 | 12746 | 8041 | 25804 | 5238 | 9561 | 7922 |
| SRR10836718 | 33450 | 10237 | 12491 | 6092 | 21758 | 4900 | 7862 | 5777 |
| SRR10836719 | 35496 | 10534 | 12397 | 7834 | 24734 | 5295 | 9159 | 7374 |
| SRR10836720 | 33601 | 10286 | 11627 | 6808 | 22020 | 5017 | 7992 | 6098 |
| SRR10836721 | 35578 | 9419 | 13733 | 7932 | 24332 | 4829 | 9786 | 6809 |
| SRR10836722 | 39323 | 10354 | 14880 | 8975 | 27165 | 4987 | 10682 | 8331 |
| SRR10836723 | 41192 | 9261 | 16100 | 11038 | 29585 | 4862 | 12874 | 8788 |
| SRR10836724 | 47236 | 10759 | 18691 | 12543 | 31827 | 5266 | 13517 | 9975 |
| SRR10836725 | 18537 | 5522 | 7446 | 2986 | 12185 | 3949 | 4124 | 2430 |
| SRR10836726 | 27739 | 7627 | 11408 | 5177 | 17899 | 4846 | 6595 | 4285 |
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