DBNascent | Samples

SRR6508247,SRR6508248,SRR6508249,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR6508247	412	Cardamone2018mitochondrial	GRO-seq	circularization	control	False	3	1
SRR6508248	413	Cardamone2018mitochondrial	GRO-seq	circularization	experimental	False	3	1
SRR6508249	414	Cardamone2018mitochondrial	GRO-seq	circularization	experimental	False	4	1
SRR6508250	415	Cardamone2018mitochondrial	GRO-seq	circularization	experimental	False	4	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR6508247	M. musculus	cell line	3T3-L1				siRNA control
SRR6508248	M. musculus	cell line	3T3-L1				siRNA control
SRR6508249	M. musculus	cell line	3T3-L1				siRNA Gps2
SRR6508250	M. musculus	cell line	3T3-L1				siRNA Gps2

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR6508247	no treatment		None	None	None
SRR6508248	treatment	FCCP	-3 hr	0 hr	3 hr
SRR6508249	no treatment		None	None	None
SRR6508250	treatment	FCCP	-3 hr	0 hr	3 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR6508247	50	42,824,079	0.74204	0.7363	3.19982	0.28145	3	2
SRR6508248	50	35,264,832	0.66746	0.7609	2.78947	0.39633	3	1
SRR6508249	50	30,188,118	0.868	0.7831	4.17079	0.2468	4	3
SRR6508250	50	41,018,170	0.86017	0.7819	3.37481	0.31006	4	3

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR6508247	15815	6908	4775	2485	10786	5174	2764	2010
SRR6508248	14740	5688	5062	2484	9846	4100	2861	2115
SRR6508249	6420	1036	2965	847	6219	786	2596	1331
SRR6508250	8875	1212	4640	1228	8474	978	4108	1929