DBNascent | Samples

SRZ6427123,SRZ6427125,SRZ6427127,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRZ6427123	462	Chen2018rna	GRO-seq	circularization	experimental	False	4	1
SRZ6427125	463	Chen2018rna	GRO-seq	circularization	experimental	False	4	2
SRZ6427127	464	Chen2018rna	GRO-seq	circularization	control	False	5	1
SRZ6427129	465	Chen2018rna	GRO-seq	circularization	control	False	5	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRZ6427123	M. musculus	primary cell	splenic B cell				shRNA Rod1
SRZ6427125	M. musculus	primary cell	splenic B cell				shRNA Rod1
SRZ6427127	M. musculus	primary cell	splenic B cell
SRZ6427129	M. musculus	primary cell	splenic B cell

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRZ6427123	treatment	lipopolysaccharide (5 microg/mL)	-3 day	0 day	3 day
SRZ6427125	treatment	lipopolysaccharide (5 microg/mL)	-3 day	0 day	3 day
SRZ6427127	treatment	lipopolysaccharide (5 microg/mL)	-3 day	0 day	3 day
SRZ6427129	treatment	lipopolysaccharide (5 microg/mL)	-3 day	0 day	3 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRZ6427123	52	54,637,484	0.93043	0.6047	1.87903	0.08366	4	1
SRZ6427125	52	72,438,479	0.92904	0.5837	1.90124	0.08672	4	1
SRZ6427127	52	74,005,814	0.95601	0.5705	1.26363	0.05566	5	1
SRZ6427129	52	72,562,824	0.95383	0.5659	1.31361	0.05852	5	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRZ6427123	4560	1626	1300	85	2560	1207	566	475
SRZ6427125	6039	2275	1709	113	3767	1865	789	627
SRZ6427127	4641	1850	1263	87	2648	1363	544	339
SRZ6427129	4626	1850	1289	84	2662	1396	556	364