DBNascent | Samples

SRR8812163,SRR8812164,SRR8812165,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR8812163	605	Douillet2020uncoupling	PRO-seq	ligation	control	False	2	1
SRR8812164	606	Douillet2020uncoupling	PRO-seq	ligation	experimental	False	2	1
SRR8812165	607	Douillet2020uncoupling	PRO-seq	ligation	experimental	False	1	1
SRR8812166	608	Douillet2020uncoupling	PRO-seq	ligation	control	False	1	2
SRR8812167	609	Douillet2020uncoupling	PRO-seq	ligation	experimental	False	1	2
SRR8812168	610	Douillet2020uncoupling	PRO-seq	ligation	experimental	False	1	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR8812163	M. musculus	cell line	ESC	V6.5		shRNA control (stable)
SRR8812164	M. musculus	cell line	ESC	V6.5		Mll2 -/-; shRNA control (stable)
SRR8812165	M. musculus	cell line	ESC	V6.5		Mll2 -/-; shRNA Cxxc1 (stable)
SRR8812166	M. musculus	cell line	ESC	V6.5		shRNA control (stable)
SRR8812167	M. musculus	cell line	ESC	V6.5		Mll2 -/-; shRNA control (stable)
SRR8812168	M. musculus	cell line	ESC	V6.5		Mll2 -/-; shRNA Cxxc1 (stable)

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR8812163	no treatment		None	None	None
SRR8812164	no treatment		None	None	None
SRR8812165	no treatment		None	None	None
SRR8812166	no treatment		None	None	None
SRR8812167	no treatment		None	None	None
SRR8812168	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR8812163	16	89,533,431	0.56771	0.8235	5.81021	0.63271	2	3
SRR8812164	16	78,084,973	0.56981	0.8404	5.96789	0.61422	2	3
SRR8812165	16	118,909,285	0.44879	0.8306	3.05842	0.7399	1	2
SRR8812166	16	65,750,431	0.49681	0.8413	2.81551	0.62015	1	1
SRR8812167	16	54,533,289	0.4406	0.8534	3.04724	0.67289	1	2
SRR8812168	16	61,537,528	0.42484	0.8421	2.94206	0.69175	1	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR8812163	70833	21288	21854	23283	67873	9948	26009	26054
SRR8812164	67322	18844	21316	23196	63205	9349	23657	25272
SRR8812165	86288	16920	25913	38115	90600	9657	33731	41963
SRR8812166	35638	10942	10317	10215	29359	6845	9820	10357
SRR8812167	39832	10887	11898	12862	30344	6644	9898	11569
SRR8812168	50198	11226	14829	19289	37915	7022	12610	15822