DBNascent | Samples

SRR8033049,SRR8033050,SRR8033051,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR8033049	688	Esousa2019kinetics	PRO-seq	ligation	control	False	2	1
SRR8033050	689	Esousa2019kinetics	PRO-seq	ligation	control	False	1	2
SRR8033051	690	Esousa2019kinetics	PRO-seq	ligation	experimental	False	1	1
SRR8033052	691	Esousa2019kinetics	PRO-seq	ligation	experimental	False	2	1
SRR8033053	692	Esousa2019kinetics	PRO-seq	ligation	experimental	False	1	1
SRR8033054	693	Esousa2019kinetics	PRO-seq	ligation	experimental	False	2	1
SRR8033055	694	Esousa2019kinetics	PRO-seq	ligation	experimental	False	2	1
SRR8033056	695	Esousa2019kinetics	PRO-seq	ligation	experimental	False	1	1
SRR8033057	696	Esousa2019kinetics	PRO-seq	ligation	experimental	False	1	1
SRR8033058	697	Esousa2019kinetics	PRO-seq	ligation	experimental	False	1	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR8033049	M. musculus	cell line	ESC	TX1072	C57BL/6 x CAST/EiJ	dox-inducible Xist endogenous allele
SRR8033050	M. musculus	cell line	ESC	TX1072	C57BL/6 x CAST/EiJ	dox-inducible Xist endogenous allele
SRR8033051	M. musculus	cell line	ESC	TX1072	C57BL/6 x CAST/EiJ	dox-inducible Xist endogenous allele
SRR8033052	M. musculus	cell line	ESC	TX1072	C57BL/6 x CAST/EiJ	dox-inducible Xist endogenous allele
SRR8033053	M. musculus	cell line	ESC	TX1072	C57BL/6 x CAST/EiJ	dox-inducible Xist endogenous allele
SRR8033054	M. musculus	cell line	ESC	TX1072	C57BL/6 x CAST/EiJ	dox-inducible Xist endogenous allele
SRR8033055	M. musculus	cell line	ESC	TX1072	C57BL/6 x CAST/EiJ	dox-inducible Xist endogenous allele
SRR8033056	M. musculus	cell line	ESC	TX1072	C57BL/6 x CAST/EiJ	dox-inducible Xist endogenous allele
SRR8033057	M. musculus	cell line	ESC	TX1072	C57BL/6 x CAST/EiJ	dox-inducible Xist endogenous allele
SRR8033058	M. musculus	cell line	ESC	TX1072	C57BL/6 x CAST/EiJ	dox-inducible Xist endogenous allele

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR8033049	no treatment		None	None	None
SRR8033050	no treatment		None	None	None
SRR8033051	treatment	doxycycline (1 microg/mL)	-30 min	0 min	30 min
SRR8033052	treatment	doxycycline (1 microg/mL)	-1 hr	0 hr	1 hr
SRR8033053	treatment	doxycycline (1 microg/mL)	-2 hr	0 hr	2 hr
SRR8033054	treatment	doxycycline (1 microg/mL)	-4 hr	0 hr	4 hr
SRR8033055	treatment	doxycycline (1 microg/mL)	-8 hr	0 hr	8 hr
SRR8033056	treatment	doxycycline (1 microg/mL)	-12 hr	0 hr	12 hr
SRR8033057	treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day
SRR8033058	treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR8033049	101	38,483,719	0.55545	0.7497	3.361	0.57091	2	2
SRR8033050	101	44,662,319	0.46344	0.7355	3.38943	0.66697	1	2
SRR8033051	101	28,137,418	0.4954	0.7537	3.67991	0.58501	1	2
SRR8033052	101	29,519,210	0.51228	0.7338	3.61287	0.59853	2	2
SRR8033053	101	32,506,881	0.46106	0.7873	3.57284	0.65439	1	2
SRR8033054	101	25,150,650	0.50124	0.7384	3.82538	0.59461	2	2
SRR8033055	101	43,764,213	0.56201	0.7397	3.89112	0.57394	2	2
SRR8033056	101	29,412,875	0.49948	0.696	3.64344	0.58479	1	2
SRR8033057	101	27,680,028	0.46053	0.7571	3.57016	0.63099	1	2
SRR8033058	101	41,189,366	0.42364	0.7938	3.27983	0.68572	1	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR8033049	52090	10491	18010	18616	32989	8375	9904	11985
SRR8033050	53471	11588	17627	19752	37849	8366	11798	14820
SRR8033051	47008	10450	16208	15527	27824	7550	7922	9545
SRR8033052	43813	9835	14842	14534	26126	7150	7520	8956
SRR8033053	49678	11051	16700	17187	31137	7520	9378	11527
SRR8033054	37776	9303	12287	12009	22733	7519	6128	6992
SRR8033055	54946	12256	18644	18819	36670	8715	11216	13457
SRR8033056	42858	10080	14358	13974	25966	7755	7280	8503
SRR8033057	42668	9992	13690	14762	26287	7491	7435	9142
SRR8033058	52207	11810	17109	18707	36825	8108	11461	14328