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SRR1517780,SRR1517781,SRR1517782,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1517780 | 752 | Fang2014circadian | GRO-seq | circularization | control | False | 1 | 1 |
| SRR1517781 | 753 | Fang2014circadian | GRO-seq | circularization | control | False | 1 | 1 |
| SRR1517782 | 754 | Fang2014circadian | GRO-seq | circularization | control | False | 2 | 1 |
| SRR1517783 | 755 | Fang2014circadian | GRO-seq | circularization | control | False | 2 | 1 |
| SRR1517784 | 756 | Fang2014circadian | GRO-seq | circularization | control | False | 1 | 1 |
| SRR1517785 | 757 | Fang2014circadian | GRO-seq | circularization | control | False | 2 | 1 |
| SRR1517786 | 758 | Fang2014circadian | GRO-seq | circularization | control | False | 2 | 1 |
| SRR1517787 | 759 | Fang2014circadian | GRO-seq | circularization | control | False | 1 | 1 |
| SRR1517788 | 760 | Fang2014circadian | GRO-seq | circularization | control | False | 2 | 2 |
| SRR1517789 | 761 | Fang2014circadian | GRO-seq | circularization | control | False | 2 | 2 |
| SRR1517790 | 762 | Fang2014circadian | GRO-seq | circularization | control | False | 1 | 3 |
| SRR1517791 | 763 | Fang2014circadian | GRO-seq | circularization | experimental | False | 1 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1517780 | M. musculus | tissue | liver | C57BL/6 | |||
| SRR1517781 | M. musculus | tissue | liver | C57BL/6 | |||
| SRR1517782 | M. musculus | tissue | liver | C57BL/6 | |||
| SRR1517783 | M. musculus | tissue | liver | C57BL/6 | |||
| SRR1517784 | M. musculus | tissue | liver | C57BL/6 | |||
| SRR1517785 | M. musculus | tissue | liver | C57BL/6 | |||
| SRR1517786 | M. musculus | tissue | liver | C57BL/6 | |||
| SRR1517787 | M. musculus | tissue | liver | C57BL/6 | |||
| SRR1517788 | M. musculus | tissue | liver | C57BL/6 | |||
| SRR1517789 | M. musculus | tissue | liver | C57BL/6 | |||
| SRR1517790 | M. musculus | tissue | liver | C57BL/6 | |||
| SRR1517791 | M. musculus | tissue | liver | C57BL/6 | Rev-erb-alpha -/- |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1517780 | treatment | light cycle | -1 hr | 0 hr | 1 hr |
| SRR1517781 | treatment | light cycle | -4 hr | 0 hr | 4 hr |
| SRR1517782 | treatment | light cycle | -7 hr | 0 hr | 7 hr |
| SRR1517783 | treatment | light cycle | -10 hr | 0 hr | 10 hr |
| SRR1517784 | treatment | light cycle | -13 hr | -1 hr | 12 hr |
| SRR1517785 | treatment | light cycle | -16 hr | -4 hr | 12 hr |
| SRR1517786 | treatment | light cycle | -19 hr | -7 hr | 12 hr |
| SRR1517787 | treatment | light cycle | -22 hr | -10 hr | 12 hr |
| SRR1517788 | treatment | light cycle | -10 hr | 0 hr | 10 hr |
| SRR1517789 | treatment | light cycle | -22 hr | -10 hr | 12 hr |
| SRR1517790 | treatment | light cycle | -10 hr | 0 hr | 10 hr |
| SRR1517791 | treatment | light cycle | -10 hr | 0 hr | 10 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1517780 | 50 | 48,898,132 | 0.47372 | 0.3949 | 3.11226 | 0.58058 | 1 | 2 |
| SRR1517781 | 50 | 57,222,682 | 0.47389 | 0.4278 | 2.91696 | 0.5991 | 1 | 1 |
| SRR1517782 | 50 | 97,071,267 | 0.50445 | 0.4521 | 3.12956 | 0.61938 | 2 | 2 |
| SRR1517783 | 50 | 153,835,438 | 0.57862 | 0.5453 | 2.90808 | 0.60105 | 2 | 1 |
| SRR1517784 | 50 | 103,807,815 | 0.48831 | 0.4494 | 2.98211 | 0.63596 | 1 | 1 |
| SRR1517785 | 50 | 79,948,848 | 0.54593 | 0.4627 | 2.82247 | 0.55687 | 2 | 1 |
| SRR1517786 | 50 | 76,702,405 | 0.50518 | 0.468 | 3.114 | 0.61893 | 2 | 2 |
| SRR1517787 | 50 | 102,963,306 | 0.46833 | 0.689 | 2.62322 | 0.70312 | 1 | 1 |
| SRR1517788 | 50 | 78,688,309 | 0.5205 | 0.3594 | 2.9705 | 0.56759 | 2 | 1 |
| SRR1517789 | 50 | 85,716,263 | 0.52296 | 0.3813 | 2.86899 | 0.57448 | 2 | 1 |
| SRR1517790 | 50 | 59,624,269 | 0.49532 | 0.4109 | 3.18213 | 0.566 | 1 | 2 |
| SRR1517791 | 50 | 68,707,329 | 0.45972 | 0.4694 | 2.77621 | 0.6251 | 1 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1517780 | 17649 | 6378 | 6070 | 3627 | 19620 | 8150 | 6506 | 3774 |
| SRR1517781 | 18230 | 6652 | 6254 | 3788 | 21334 | 8211 | 7551 | 4283 |
| SRR1517782 | 21221 | 7842 | 7014 | 4707 | 26796 | 8334 | 10554 | 6174 |
| SRR1517783 | 25991 | 10371 | 7579 | 6158 | 34699 | 8240 | 14344 | 9611 |
| SRR1517784 | 20093 | 7733 | 6521 | 4370 | 27328 | 8258 | 10881 | 6338 |
| SRR1517785 | 19181 | 7407 | 6364 | 3938 | 24212 | 8301 | 8980 | 5311 |
| SRR1517786 | 20820 | 7672 | 6917 | 4750 | 26692 | 8629 | 10326 | 6053 |
| SRR1517787 | 26492 | 10289 | 7898 | 6777 | 37173 | 8766 | 15597 | 10475 |
| SRR1517788 | 17438 | 6551 | 6004 | 3324 | 20849 | 7952 | 7550 | 3953 |
| SRR1517789 | 19264 | 7153 | 6395 | 4218 | 23837 | 8395 | 8755 | 5109 |
| SRR1517790 | 14836 | 5557 | 5125 | 2538 | 17032 | 6869 | 5734 | 3142 |
| SRR1517791 | 18006 | 6816 | 5943 | 3763 | 22359 | 7762 | 8111 | 4944 |
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